Water-deficit stress, usually shortened to water- or drought stress, is one of the most critical abiotic stressors limiting plant growth, crop yield and quality concerning food production. Today, agriculture consumes about 80-90% of the global freshwater used by humans and about two thirds are used for crop irrigation. An increasing world population and a predicted rise of 1.0-2.5-°C in the annual mean global temperature as a result of climate change will further increase the demand of water in agriculture. Therefore, one of the most challenging tasks of our generation is to reduce the amount water used per unit yield to satisfy the second UN Sustainable Development Goal and to ensure global food security. Precision agriculture offers new farming methods with the goal to improve the efficiency of crop production by a sustainable use of resources. Plant responses to water stress are complex and co-occur with other environmental stresses under natural conditions. In general, water stress causes plant physiological and biochemical changes that depend on the severity and the duration of the actual plant water deficit. Stomatal closure is one of the first responses to plant water stress causing a decrease in plant transpiration and thus an increase in plant temperature. Prolonged or severe water stress leads to irreversible damage to the photosynthetic machinery and is associated with decreasing chlorophyll content and leaf structural changes (e.g., leaf rolling). Since a crop can already be irreversibly damaged by only mild water deficit, a pre-visual detection of water stress symptoms is essential to avoid yield loss. Remote sensing offers a non-destructive and spatio-temporal method for measuring numerous physiological, biochemical and structural crop characteristics at different scales and thus is one of the key technologies used in precision agriculture. With respect to the detection of plant responses to water stress, the current state-of-the-art hyperspectral remote sensing imaging techniques are based on measurements of thermal infrared emission (TIR; 8-14 -µm), visible, near- and shortwave infrared reflectance (VNIR/SWIR; 0.4-2.5 -µm), and sun-induced fluorescence (SIF; 0.69 and 0.76 -µm). It is, however, still unclear how sensitive these techniques are with respect to water stress detection. Therefore, the overall aim of this dissertation was to provide a comparative assessment of remotely sensed measures from the TIR, SIF, and VNIR/SWIR domains for their ability to detect plant responses to water stress at ground- and airborne level. The main findings of this thesis are: (i) temperature-based indices (e.g., CWSI) were most sensitive for the detection of plant water stress in comparison to reflectance-based VNIR/SWIR indices (e.g., PRI) and SIF at both, ground- and airborne level, (ii) for the first time, spectral emissivity as measured by the new hyperspectral TIR instrument could be used to detect plant water stress at ground level. Based on these findings it can be stated that hyperspectral TIR remote sensing offers great potential for the detection of plant responses to water stress at ground- and airborne level based on both TIR key variables, surface temperature and spectral emissivity. However, the large-scale application of water stress detection based on hyperspectral TIR measures in precision agriculture will be challenged by several problems: (i) missing thresholds of temperature-based indices (e.g., CWSI) for the application in irrigation scheduling, (ii) lack of current TIR satellite missions with suitable spectral and spatial resolution, (iii) lack of appropriate data processing schemes (including atmosphere correction and temperature emissivity separation) for hyperspectral TIR remote sensing at airborne- and satellite level.
Veterinary antibiotics are released to arable agricultural soil together with manure, including nutrients, organic matter, and microorganisms. Previously, the effects of antibiotic-contaminated manure on soil microbial community activity, function, structure, and resistance have been reported under controlled experimental conditions. This thesis further evaluated the antimicrobial effects as influenced by different manure compositions, soil microhabitats and moisture regimes, plants, and different distances to roots. Microbial community responses were determined by phenotypic phospholipid fatty acid (PLFA) and genotypic 16S rRNA gene fragment analyses. (Chapter 3) demonstrates that medication of pigs with difloxacin (DIF) and sulfadiazine (SDZ) alters the molecular-chemical pattern of slurries, confounding the detection of a consistent antibiotic effect in bulk and respective rhizosphere soil. This was evaluated in a 63-day mesocosm experiment considering typical agricultural manure applications to maize planted soil. Fecal bacteria were detected even 14 days after manure amendment. Manure of DIF- and SDZ-medicated pigs clearly affected the microbial community in mesocosm bulk and rhizosphere soil, temporarily matching antibiotic effects reported in previous studies. (Chapter 4) discusses the influences of different soil microhabitats on antibiotic fate and the effects on soil microflora. Total extractable SDZ was more than two-fold larger in earthworm burrows and soil macroaggregate surfaces compared to bulk soil or the interior fraction of aggregates. Furthermore, soil microbial communities were affected by a combination of soil microhabitat and treatment, which was reflected by different structural and functional community responses to SDZ in laboratory and under field conditions. (Chapter 5) evaluates if SDZ effects on microbial communities are more pronounced in soils which undergo periodic changes in soil moisture by drying-rewetting dynamics compared to soils without such moisture fluctuations. This was tested in a 49-day climate chamber soil pot experiment grown with grass. Manure-amended pots without or with SDZ contamination were incubated under a dynamic moisture regime with repeated drying and rewetting changes of more than twenty percent maximum water holding capacity compared to the control moisture regime. The microbial biomass, but less pronouncedly the community structure, showed an increased responsiveness to the combined stress of SDZ and dynamic moisture changes in the laboratory. Similar responses were documented under field conditions. (Chapter 6) indicated adverse effects of SDZ on root geotropism, number of lateral roots, and water uptake by plants in a 40-day greenhouse experiment with willow and maize grown in soil with environmentally relevant and worst-case antibiotic contamination. (Chapter 7) showed that the associated microbial community responded to a combination of plant species, distance to the root, and antibiotic spiking concentration. In highly antibiotic-contaminated soils, the structural and functional responses of the microbial community were dominated by indirect antibiotic effects on plants and roots.
A big challenge for agriculture in the 21st century is the provision of food safety to fast growing world- population, which not only demands the well utilisation of the available agricultural resources but also to develop new advancements in the mass production of food crops. Wheat is the third largest food crop of the world and Pakistan is the eighth largest wheat producing country globally. Rice is the second most important staple food of Pakistan after wheat, grown in all provinces of the country. Maize is the world- top ranking food crop followed by wheat and rice. The harvested produts have to be stored in different types of storage structures on small or large scale for food as well as seed purpose. In Pakistan, the harvested grains are stored for the whole year till the introduction of fresh produce in order to ensure the regular food supply throughout the year. However, it is this extended storage period making the commodity more vulnerable to insect attacks. Rhyzopertha dominica (Coleoptera: Bostrychidae), Cryptolestes ferrugineus (Coleoptera: Laemophloeidae), Tribolium castaneum (Coleoptera: Tenebrionidae) and Liposcelis spp. (Psocoptera: Liposcelididae) are the major and most damaging insect pests of stored products all around the world. Various management strategies have been adopted for stored grain insect pests mostly relying upon the use of a broad spectrum of insecticides, but the injudicious use of these chemicals raised various environmental and human health related issues, which necessitate the safe use of the prevailing control measures and evaluation of new and alternative control methods. The application of new chemical insecticides, microbial insecticides (particularly entomopathogenic fungi) and the use of inert dusts (diatomaceous earths) is believed amongst the potential alternatives to generally used insecticides in stored grain insect management system. In the current investigations, laboratory bioassays conducted to evaluate the effects of combining Imidacloprid (new chemistry insecticide) with and without Protect-It (diatomaceous earth formulation) against R. dominica, L. paeta, C. ferrugineus and T. castaneum, on three different grain commodities (i.e. wheat, maize and rice) revealed differences in adult mortality levels among grains and insect species tested. Individually, Imidacloprid was more effective as compared with Protect-It alone and the highest numbers of dead adults were recorded in wheat. The insecticidal efficacy of B. bassiana with Protect-It and DEBBM was also assessed against all test insect species under laboratory conditions. The findings of these studies revealed that the more extended exposure period and the higher combined application rate of B. bassiana and DEs provided the highest mortality of the test insect species. The progeny emergence of each insect species was also greatly suppressed where the highest dose rates of the combined treatments were applied. The residual efficacy of all three control measures Imidacloprid, B. bassiana and DEBBM formulation was also evaluated against all test insect species. The bioassays were carried out after grain treatments and monthly for 6 months. The results indicated that the adult mortality of each test insect species was decreased within the six month storage period, and the integarted application of the test grain protectants enhanced the mortality rates than their alone treatments. The maximum mortality was noted in the combined treatment of DEBBM with Imidacloprid. At the end, the effectiveness of B. bassiana, DEBBM and Imidacloprid applied alone as well as in combinations, against all above mentioned test insect species was also evaluated under field conditions in trials conducted in four districts of Punjab, Pakistan. For each district, a significant difference was observed between treatments, while the combined treatments gave better control of test species as compared with them alone. The least number of surviving adults and minimum percentage of grain damage was observed for the DEBBM and Imidacloprid combination, but DEBBM with B. bassiana provided the best long-term protection as compared with the remaining treatments.