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For grape canopy pixels captured by an unmanned aerial vehicle (UAV) tilt-mounted RedEdge-M multispectral sensor in a sloped vineyard, an in situ Walthall model can be established with purely image-based methods. This was derived from RedEdge-M directional reflectance and a vineyard 3D surface model generated from the same imagery. The model was used to correct the angular effects in the reflectance images to form normalized difference vegetation index (NDVI)orthomosaics of different view angles. The results showed that the effect could be corrected to a certain scope, but not completely. There are three drawbacks that might restrict a successful angular model construction and correction: (1) the observable micro shadow variation on the canopy enabled by the high resolution; (2) the complexity of vine canopies that causes an inconsistency between reflectance and canopy geometry, including effects such as micro shadows and near-infrared (NIR) additive effects; and (3) the resolution limit of a 3D model to represent the accurate real-world optical geometry. The conclusion is that grape canopies might be too inhomogeneous for the tested method to perform the angular correction in high quality.
In order to discuss potential sustainability issues of expanding silage maize cultivation in Rhineland-Palatinate, spatially explicit monitoring is necessary. Publicly available statistical records are often not a sufficient basis for extensive research, especially on soil health, where risk factors like erosion and compaction depend on variables that are specific to every site, and hard to generalize for larger administrative aggregates. The focus of this study is to apply established classification algorithms to estimate maize abundance for each independent pixel, while at the same time accounting for their spatial relationship. Therefore, two ways to incorporate spatial autocorrelation of neighboring pixels are combined with three different classification models. The performance of each of these modeling approaches is analyzed and discussed. Finally, one prediction approach is applied to the imagery, and the overall predicted acreage is compared to publicly available data. We were able to show that Support Vector Machine (SVM) classification and Random Forests (RF) were able to distinguish maize pixels reliably, with kappa values well above 0.9 in most cases. The Generalized Linear Model (GLM) performed substantially worse. Furthermore, Regression Kriging (RK) as an approach to integrate spatial autocorrelation into the prediction model is not suitable in use cases with millions of sparsely clustered training pixels. Gaussian Blur is able to improve predictions slightly in these cases, but it is possible that this is only because it smoothes out impurities of the reference data. The overall prediction with RF classification combined with Gaussian Blur performed well, with out of bag error rates of 0.5% in 2009 and 1.3% in 2016. Despite the low error rates, there is a discrepancy between the predicted acreage and the official records, which is 20% in 2009 and 27% in 2016.
The forward testing effect refers to the finding that retrieval practice of previously studied information enhances learning and retention of subsequently studied other information. While most of the previous research on the forward testing effect examined group differences, the present study took an individual differences approach to investigate this effect. Experiment 1 examined whether the forward effect has test-retest reliability between two experimental sessions. Experiment 2 investigated whether the effect is related to participants’ working memory capacity. In both experiments (and each session of Experiment 1), participants studied three lists of items in anticipation of a final cumulative recall test. In the testing condition, participants were tested immediately on lists 1 and 2, whereas in the restudy condition, they restudied lists 1 and 2. In both conditions, participants were tested immediately on list 3. On the group level, the results of both experiments demonstrated a forward testing effect, with interim testing of lists 1 and 2 enhancing immediate recall of list 3. On the individual level, the results of Experiment 1 showed that the forward effect on list 3 recall has moderate test-retest reliability between two experimental sessions. In addition, the results of Experiment 2 showed that the forward effect on list 3 recall does not depend on participants’ working memory capacity. These findings suggest that the forward testing effect is reliable at the individual level and affects learners at a wide range of working memory capacities alike. The theoretical and practical implications of the findings are discussed.
Finding behavioral parameterization for a 1-D water balance model by multi-criteria evaluation
(2019)
Evapotranspiration is often estimated by numerical simulation. However, to produce accurate simulations, these models usually require on-site measurements for parameterization or calibration. We have to make sure that the model realistically reproduces both, the temporal patterns of soil moisture and evapotranspiration. In this study, we combine three sources of information: (i) measurements of sap velocities; (ii) soil moisture; and (iii) expert knowledge on local runoff generation and water balance to define constraints for a “behavioral” forest stand water balance model. Aiming for a behavioral model, we adjusted soil moisture at saturation, bulk resistance parameters and the parameters of the water retention curve (WRC). We found that the shape of the WRC influences substantially the behavior of the simulation model. Here, only one model realization could be referred to as “behavioral”. All other realizations failed for a least one of our evaluation criteria: Not only transpiration and soil moisture are simulated consistently with our observations, but also total water balance and runoff generation processes. The introduction of a multi-criteria evaluation scheme for the detection of unrealistic outputs made it possible to identify a well performing parameter set. Our findings indicate that measurement of different fluxes and state variables instead of just one and expert knowledge concerning runoff generation facilitate the parameterization of a hydrological model.
Harvesting of silage maize in late autumn on waterlogged soils may result in several ecological problems such as soil compaction and may subsequently be a major threat to soil fertility in Europe. It was hypothesized that perennial energy crops might reduce the vulnerability for soil compaction through earlier harvest dates and improved soil stability. However, the performance of such crops to be grown on soil that are periodically waterlogged and implications for soil chemical and microbial properties are currently an open issue. Within the framework of a two-year pot experiment we investigated the potential of the cup plant (Silphium perfoliatum L.), Jerusalem artichoke (Helianthus tuberosus), giant knotweed (Fallopia japonicum X bohemica), tall wheatgrass (Agropyron elongatum), and reed canary grass (Phalaris arundinacea) for cultivation under periodically waterlogged soil conditions during the winter half year and implications for soil chemical and biological properties. Examined perennial energy crops coped with periodical waterlogging and showed yields 50% to 150% higher than in the control which was never faced with waterlogging. Root formation was similar in waterlogged and non-waterlogged soil layers. Soil chemical and microbial properties clearly responded to different soil moisture treatments. For example, dehydrogenase activity was two to four times higher in the periodically waterlogged treatment compared to the control. Despite waterlogging, aerobic microbial activity was significantly elevated indicating morphological and metabolic adaptation of the perennial crops to withstand waterlogged conditions. Thus, our results reveal first evidence of a site-adapted biomass production on periodical waterlogged soils through the cultivation of perennial energy crops and for intense plant microbe interactions.
A satellite-based climatology of wind-induced surface temperature anomalies for the Antarctic
(2019)
It is well-known that katabatic winds can be detected as warm signatures in the surface temperature over the slopes of the Antarctic ice sheets. For appropriate synoptic forcing and/or topographic channeling, katabatic surges occur, which result in warm signatures also over adjacent ice shelves. Moderate Resolution Imaging Spectroradiometer (MODIS) ice surface temperature (IST) data are used to detect warm signatures over the Antarctic for the winter periods 2002–2017. In addition, high-resolution (5 km) regional climate model data is used for the years of 2002 to 2016. We present a case study and a climatology of wind-induced IST anomalies for the Ross Ice Shelf and the eastern Weddell Sea. The IST anomaly distributions show maxima around 10–15K for the slopes, but values of more than 25K are also found. Katabatic surges represent a strong climatological signal with a mean warm anomaly of more than 5K on more than 120 days per winter for the Byrd Glacier and the Nimrod Glacier on the Ross Ice Shelf. The mean anomaly for the Brunt Ice Shelf is weaker, and exceeds 5K on about 70 days per winter. Model simulations of the IST are compared to the MODIS IST, and show a very good agreement. The model data show that the near-surface stability is a better measure for the response to the wind than the IST itself.
Abstract: Thermal infrared (TIR) multi-/hyperspectral and sun-induced fluorescence (SIF) approaches together with classic solar-reflective (visible, near-, and shortwave infrared reflectance (VNIR)/SWIR) hyperspectral remote sensing form the latest state-of-the-art techniques for the detection of crop water stress. Each of these three domains requires dedicated sensor technology currently in place for ground and airborne applications and either have satellite concepts under development (e.g., HySPIRI/SBG (Surface Biology and Geology), Sentinel-8, HiTeSEM in the TIR) or are subject to satellite missions recently launched or scheduled within the next years (i.e., EnMAP and PRISMA (PRecursore IperSpettrale della Missione Applicativa, launched on March 2019) in the VNIR/SWIR, Fluorescence Explorer (FLEX) in the SIF). Identification of plant water stress or drought is of utmost importance to guarantee global water and food supply. Therefore, knowledge of crop water status over large farmland areas bears large potential for optimizing agricultural water use. As plant responses to water stress are numerous and complex, their physiological consequences affect the electromagnetic signal in different spectral domains. This review paper summarizes the importance of water stress-related applications and the plant responses to water stress, followed by a concise review of water-stress detection through remote sensing, focusing on TIR without neglecting the comparison to other spectral domains (i.e., VNIR/SWIR and SIF) and multi-sensor approaches. Current and planned sensors at ground, airborne, and satellite level for the TIR as well as a selection of commonly used indices and approaches for water-stress detection using the main multi-/hyperspectral remote sensing imaging techniques are reviewed. Several important challenges are discussed that occur when using spectral emissivity, temperature-based indices, and physically-based approaches for water-stress detection in the TIR spectral domain. Furthermore, challenges with data processing and the perspectives for future satellite missions in the TIR are critically examined. In conclusion, information from multi-/hyperspectral TIR together with those from VNIR/SWIR and SIF sensors within a multi-sensor approach can provide profound insights to actual plant (water) status and the rationale of physiological and biochemical changes. Synergistic sensor use will open new avenues for scientists to study plant functioning and the response to environmental stress in a wide range of ecosystems.
Background
In light of the current biodiversity crisis, DNA barcoding is developing into an essential tool to quantify state shifts in global ecosystems. Current barcoding protocols often rely on short amplicon sequences, which yield accurate identification of biological entities in a community but provide limited phylogenetic resolution across broad taxonomic scales. However, the phylogenetic structure of communities is an essential component of biodiversity. Consequently, a barcoding approach is required that unites robust taxonomic assignment power and high phylogenetic utility. A possible solution is offered by sequencing long ribosomal DNA (rDNA) amplicons on the MinION platform (Oxford Nanopore Technologies).
Findings
Using a dataset of various animal and plant species, with a focus on arthropods, we assemble a pipeline for long rDNA barcode analysis and introduce a new software (MiniBar) to demultiplex dual indexed Nanopore reads. We find excellent phylogenetic and taxonomic resolution offered by long rDNA sequences across broad taxonomic scales. We highlight the simplicity of our approach by field barcoding with a miniaturized, mobile laboratory in a remote rainforest. We also test the utility of long rDNA amplicons for analysis of community diversity through metabarcoding and find that they recover highly skewed diversity estimates.
Conclusions
Sequencing dual indexed, long rDNA amplicons on the MinION platform is a straightforward, cost-effective, portable, and universal approach for eukaryote DNA barcoding. Although bulk community analyses using long-amplicon approaches may introduce biases, the long rDNA amplicons approach signifies a powerful tool for enabling the accurate recovery of taxonomic and phylogenetic diversity across biological communities.
