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The viviparous eelpout Zoarces viviparus is a common fish across the North Atlantic and has successfully colonized habitats across environmental gradients. Due to its wide distribution and predictable phenotypic responses to pollution, Z. viviparus is used as an ideal marine bioindicator organism and has been routinely sampled over decades by several countries to monitor marine environmental health. Additionally, this species is a promising model to study adaptive processes related to environmental change, specifically global warming. Here, we report the chromosome-level genome assembly of Z. viviparus, which has a size of 663 Mb and consists of 607 scaffolds (N50 = 26 Mb). The 24 largest represent the 24 chromosomes of the haploid Z. viviparus genome, which harbors 98% of the complete Benchmarking Universal Single-Copy Orthologues defined for ray-finned fish, indicating that the assembly is highly contiguous and complete. Comparative analyses between the Z. viviparus assembly and the chromosome-level genomes of two other eelpout species revealed a high synteny, but also an accumulation of repetitive elements in the Z. viviparus genome. Our reference genome will be an important resource enabling future in-depth genomic analyses of the effects of environmental change on this important bioindicator species.
Environmental DNA (eDNA) metabarcoding promises to be a cost- and time-efficient monitoring tool to detect interactions of arthropods with plants. However, observation-based verification of the eDNA-derived data is still required to confirm the reliability of those detections, i.e., to verify whether the arthropods have previously interacted with the plant. Here, we conducted a comparative analysis of the performance of eDNA metabarcoding and video camera observations to detect arthropod communities associated with sunflowers (Helianthus annuus, L.). We compared the taxonomic composition, interaction type, and diversity by testing for an effect of arthropod interaction time and occupancy on successful taxon recovery by eDNA. We also tested if prewashing of the flowers successfully removed eDNA deposition from before the video camera recording, thus enabling a reset of the community for standardized monitoring. We find that eDNA and video camera observations recovered distinct communities, with about a quarter of the arthropod families overlapping. However, the overlapping taxa comprised ~90% of the interactions observed by the video camera. Interestingly, eDNA metabarcoding recovered more unique families than the video cameras, but approximately two-thirds of those unique observations were of rare species. The eDNA-derived families were biased toward plant sap-suckers, showing that such species may deposit more eDNA than, for example, transient pollinators. We also find that prewashing of the flower heads did not suffice to remove all eDNA traces, suggesting that eDNA on plants may be more temporally stable than previously thought. Our work highlights the great potential of eDNA as a tool to detect plant-arthropod interactions, particularly for specialized and frequently interacting taxa.
Amphibians globally suffer from emerging infectious diseases like chytridiomycosis caused by the continuously spreading chytrid fungi. One is Batrachochytrium salamandrivorans (Bsal) and its disease ‒ the ‘salamander plague’ ‒ which is lethal to several caudate taxa. Recently introduced into Western Europe, long distance dispersal of Bsal, likely through human mediation, has been reported. Herein we study if Alpine salamanders (Salamandra atra and S. lanzai) are yet affected by the salamander plague in the wild. Members of the genus Salamandra are highly susceptible to Bsal leading to the lethal disease. Moreover, ecological modelling has shown that the Alps and Dinarides, where Alpine salamanders occur, are generally suitable for Bsal. We analysed skin swabs of 818 individuals of Alpine salamanders and syntopic amphibians at 40 sites between 2017 to 2022. Further, we compiled those with published data from 319 individuals from 13 sites concluding that Bsal infections were not detected. Our results suggest that the salamander plague so far is absent from the geographic ranges of Alpine salamanders. That means that there is still a chance to timely implement surveillance strategies. Among others, we recommend prevention measures, citizen science approaches, and ex situ conservation breeding of endemic salamandrid lineages.