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Institute
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Cortisol exhibits typical ultradian and circadian rhythm and disturbances in its secretory pattern have been described in stress-related pathology. The aim of this thesis was to dissect the underlying structure of cortisol pulsatility and to develop tools to investigate the effects of this pulsatility on immune cell trafficking and the responsiveness of the neuroendocrine system and GR target genes to stress. Deconvolution modeling was set up as a tool for investigation of the pulsatile secretion underlying the ultradian cortisol rhythm. This further allowed us to investigate the role of the single cortisol pulses on the immune cell trafficking and the role of induced cortisol pulses on the kinetics of expression of GR target genes. The development of these three tools, would allow to induce and investigate in future the significance of single cortisol pulses for health and disease.
As an interface between an individual and its environment, the skin is a major site of direct exposure to exogenous substances. Once absorbed, these substances may interact with different biomolecules within the skin. The aryl hydrocarbon receptor (AhR) signaling pathway is one mechanism whereby the skin responds to exposures, predominantly through the induction or upregulation of metabolizing enzymes. One known physiological role of the AhR in many tissues is its involvement in the control of cell cycle progression. In skin, almost nothing is known about this physiological function. Moreover, the question whether frequently used naturally occurring phenolic derivatives like eugenol and isoeugenol impact on the AhR within the skin has rarely been studied so far. Eugenol and isoeugenol are due to their odour referred to as fragrances. The ubiquitous distribution of eugenol and isoeugenol results in an almost unavoidable contact with these substances in our daily lives. Despite this fact, their molecular mechanisms of action in skin are poorly understood. There is evidence supporting the hypothesis that these substances may impact on the AhR. On the one hand, eugenol is shown to induce cytochrome P450 1A1 (CYP1A1), a well-known target gene of the AhR. On the other hand, their known anti-proliferative properties might also be mediated by the AhR, based on its physiological function. In order to proof this hypothesis, it was investigated whether eugenol and isoeugenol impact on the AhR signaling pathway in skin cells. Results revealed that eugenol as well as isoeugenol impact on the AhR signaling pathway in skin cells. Both substances caused the translocation of the AhR into the nucleus, induced the expression of the well-known AhR target genes CYP1A1 and AhR repressor (AhRR) and exhibited impact on cell cycle progression. Both substances caused an AhR-dependent cell cycle arrest in skin cells, modulated protein levels of several cell cycle regulatory proteins, inhibited DNA synthesis and thereby reduced cell numbers. The comparison of wildtype cells to AhR knockdown cells revealed an influence of the AhR on cell cycle progression in skin cells in the absence of exogenous ligands. AhR knockdown cells exhibited a slower progression through the cell cycle caused by an accumulation of cells in the G0/G1 phase of the cell cycle and a decreased DNA synthesis rate. Modulation of cell cycle regulatory proteins involved in the transition from the G0/G1 to the S phase of the cell cycle was altered in AhR knockdown cells as well. To conclude, eugenol as well as isoeugenol were able to impact on the AhR signaling pathway in skin cells. Their molecular mechanisms of action are similar to those of classical AhR ligands, although their structural characteristics strongly differ from that of these ligands. In the absence of exogenous ligands the AhR promotes cell cycle progression in many tissues and this knowledge could be expanded on skin-derived cells within the scope of this thesis.
The skin is continuously challenged by environmental antigens that may penetrate and elicit a skin sensitization, which can develop into allergic contact dermatitis. Medical treatment for allergic contact dermatitis is limited - in fact only acute symptoms can be cured and for secondary prevention of the disease a lifelong avoidance of the allergen(s) is necessary. Therefore, the screening of the sensitization potential of substance used in commercially available products is indispensable to prevent such diseases. Hence, risk assessment is deduced from data obtained by murine local lymph node assay predominantly, but there exists a need to develop methods capable of providing the same information that do not require the use of animals in view of legislative initiatives such as REACH (registration, evaluation, authorization of chemicals) as well as the 7th Amendment to the Cosmetics Directive (2003/15/EC). Therefore, a number of promising in silico and in vitro approaches are being developed to address this need. In vitro test systems using the response of dendritic cells, which are the key player in the elicitation process of contact dermatitis, are established, but, although these novel methods for hazard identification might find application in the context of screening, it is not clear whether these approaches are useful for the purposes of risk assessment and risk management to predict allergic potency. Therefore, it was investigated whether on the one hand in vitro generated dendritic cells from primary blood monocytes (MoDC) and on the other hand a continuous monocytic cell line, the THP-1 cells, suggested as dendritic cell surrogate, react to a presumably weak allergen. Ascaridol, predicted as one of the possible causes for tea tree oil contact dermatitis, was studied and its effects in these two in vitro skin sensitization models were explored. Thus, the surface expression of CD86, HLADR, CD54, and CD40, which are known as activation markers in both in vitro models, were measured via flow cytometry. For MoDC, an augmented CD86 and HLADR surface expression in comparison to untreated cells were determined after 24 h exposure with ascaridol. An increased CD54 and CD40 surface expression were found only in some donors. After long term incubation of 96 h, ascaridol-treated MoDC still up-regulated CD86 and additionally an augmented CD40 expression was measured in all studied donors. An enhanced CD54 expression was determined for 50 percentage of all investigated donors. Furthermore, CD80, CD83 and CD209 protein expression were up-regulated in MoDC after 96 h of ascaridol incubation. In addition, it was determined that after 24 h ascaridol-treated MoDC showed an increased capacity to uptake antigens, whereas after 96 h this capacity got lost and antigen-capturing devices were reduced in comparison to non-treated MoDC. Moreover, the cytokine release of ascaridol-treated MoDC were measured after 24 h. Tumor necrosis factor (TNF)alpha, interleukin (IL)-1beta and IL 6 secretion were determined in some donors. Furthermore, IL-8 release was clearly increased after 24 h ascaridol treatment. By the same token, THP-1 cells were analyzed after ascaridol treatment for several activation markers. We found a similar response pattern as measured in MoDC. Ascaridol induced CD86 expression as well as CD54 after 24 h incubation. Additionally, the impact of ascaridol on phosphorylation of p38 mitogen-activated protein kinase, which had been shown to be involved in increased expression of activation markers like CD86 by others, were studied via Western blot analysis. A phosphorylation of p38 was determined after 15 min of ascaridol stimulation. Moreover, an augmented CD40 and HLADR surface expression were measured in a dose-response manner after 24 h ascaridol treatment. Also similar to MoDC an enhanced IL-8 secretion after ascaridol stimulation was observed in THP-1 cells. Hence, for the first time it was shown that ascaridol has immuno-modulating effects. The obtained data from both in vitro systems, MoDC and THP-1 cells, identified ascaridol as a sensitizer. Although for both systems there remain significant challenges to overcome for potency assessment, ascaridol is presumed to be a weak sensitizer probably. Interestingly, ascaridol treatment of THP-1 cells resulted also in an increased augmentation of CD184 and CCR2, two chemokine receptors expressed on monocyte. Therefore, these data encouraged the exploration of chemokine receptors as tools in skin sensitization prediction. Consequently, the combination of chemical assays with in vitro techniques may provide a useful surrogate to animal testing for skin sensitization. Due to the continuously changing environmental conditions, it is necessary to regularly monitor and update the spectrum of sensitizers that elicit contact dermatitis. Therefore, both debated in vitro test systems will become indispensable tools.
Exposure to fine and ultra-fine environmental particles is still a problem of concern in many industrialized parts of the world and the intensified use of nanotechnology may further increase exposure to small particles. Since many years air pollution is recognized as a critical problem in western countries, which led to rigorous regulation of air quality and the introduction of strict guidelines. However, the upper thresholds for particulates in ambient air recommended by the world health organization are often exceeded several times in newly industrialized countries. Such high levels of air pollution have the potential to induce adverse effects on human health. The response triggered by air pollutants is not limited to local effects of the respiratory system but is often systemic, resulting in endothelial dysfunction or atherosclerotic malady. The link between air pollution and cardiovascular disease is now accepted by the scientific community but the underlying mechanisms responsible for the pro-atherogenic potential still need to be unraveled in detail. Based on the results from in- vivo and in vitro studies the production of reactive oxygen species due to exposure to particles is the most important mechanism to explain the observed adverse effects. However, the doses that were applied in many in vivo and in vitro studies are far beyond the range of what humans are exposed to and there is the need for more realistic exposure studies. Complex in vitro coculture systems may be valuable tools to study particle-induced processes and to extrapolate effects of particles on the lung. One of the objectives of this PhD thesis was the establishment and further improvement of a complex coculture system initially described by Alfaro-Moreno et al. [1]. The system is composed of an alveolar type-II cell line (A549), differentiated macrophage-like cells (THP-1), mast cells (HMC-1) and endothelial cells (EA.hy 926), seeded in a 3D-orientation on a microporous membrane to mimic the cell response of the alveolar surface in vitro in conjunction with native aerosol exposure (VitrocellTM chamber). The tetraculture system was carefully characterized to ensure its performance and repeatability of results. The spatial distribution of the cells in the tetraculture was analyzed by confocal laser scanning microscopy (CLSM), showing a confluent layer of endothelial and epithelial cells on both sides of the Transwellâ„¢. Macrophage-like cells and mast cells can be found on top of the epithelial cells. The latter cells formed colonies under submerged conditions, which disappeared at the air-liquid-interface (ALI). The VitrocellTM aerosol exposure system was not significantly influencing the viability. Using this system, cells were exposed to an aerosol of 50 nm SiO2-Rhodamine nanoparticles (NPs) in PBS. The distribution of the NPs in the tetraculture after exposure was evaluated by CLSM. Fluorescence from internalized particles was detected in CD11b-positive THP-1 cells only. Furthermore, all cell lines were found to be able to respond to xenobiotic model compounds, such as benzo[a]pyrene (B[a]P) or 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) with the upregulation of CYP1 mRNA. With this tetraculture system the response of the endothelial part of the alveolar barrier was studied in- vitro in a still realistic exposure scenario representing the conditions for a polluted situation without direct exposure of endothelial cells. After exposure to diesel exhaust particulate matter (DEPM) the expression of different anti-oxidant target genes and inflammatory genes such as NAD(P)H dehydrogenase quinone 1 (NQO1), superoxide dismutase 1 (SOD1) and heme oxygenase 1 (HMOX1), as well as the nuclear translocation nuclear factor erythroid-derived 2 (Nrf2) was evaluated. In addition, the potential of DEPM to induce the upregulation of CYP1A1 mRNA in the endothelium was analyzed. DEPM exposure led not to an upregulation of the anti-oxidant or inflammatory target genes, but to clear nuclear translocation of Nrf2. The endothelial cells responded to the DEPM treatment also with the upregulation of CYP1A1 mRNA and nuclear translocation of the aryl hydrocarbon receptor (AhR). Overall, DEPM triggered a response in the endothelial cells after indirect exposure of the tetraculture system to low doses of DEPM, underlining the sensitivity of ALI exposure systems. The use of the tetraculture together with the native aerosol exposure equipment may finally lead to a more realistic judgment regarding the hazard of new compounds and/or new nano-scaled materials in the future. For the first time, it was possible to study the response of the endothelial cells of the alveolar barrier in vitro in a realistic exposure scenario avoiding direct exposure of endothelial cells to high amounts of particulates.
Background: The growing production and use of engineered AgNP in industry and private households make increasing concentrations of AgNP in the environment unavoidable. Although we already know the harmful effects of AgNP on pivotal bacterial driven soil functions, information about the impact of silver nanoparticles (AgNP) on the soil bacterial community structure is rare. Hence, the aim of this study was to reveal the long-term effects of AgNP on major soil bacterial phyla in a loamy soil. The study was conducted as a laboratory incubation experiment over a period of 1 year using a loamy soil and AgNP concentrations ranging from 0.01 to 1 mg AgNP/kg soil. Effects were quantified using the taxon-specific 16S rRNA qPCR.
Results: The short-term exposure of AgNP at environmentally relevant concentration of 0.01 mg AgNP/kg caused significant positive effects on Acidobacteria (44.0%), Actinobacteria (21.1%) and Bacteroidetes (14.6%), whereas beta-Proteobacteria population was minimized by 14.2% relative to the control (p ≤ 0.05). After 1 year of exposure to 0.01 mg AgNP/kg diminished Acidobacteria (p = 0.007), Bacteroidetes (p = 0.005) and beta-Proteobacteria (p = 0.000) by 14.5, 10.1 and 13.9%, respectively. Actino- and alpha-Proteobacteria were statistically unaffected by AgNP treatments after 1-year exposure. Furthermore, a statistically significant regression and correlation analysis between silver toxicity and exposure time confirmed loamy soils as a sink for silver nanoparticles and their concomitant silver ions.
Conclusions: Even very low concentrations of AgNP may cause disadvantages for the autotrophic ammonia oxidation (nitrification), the organic carbon transformation and the chitin degradation in soils by exerting harmful effects on the liable bacterial phyla.
Global human population growth is associated with many problems, such asrnfood and water provision, political conflicts, spread of diseases, and environmental destruction. The mitigation of these problems is mirrored in several global conventions and programs, some of which, however, are conflicting. Here, we discuss the conflicts between biodiversity conservation and disease eradication. Numerous health programs aim at eradicating pathogens, and many focus on the eradication of vectors, such as mosquitos or other parasites. As a case study, we focus on the "Pan African Tsetse and Trypanosomiasis Eradication Campaign," which aims at eradicating a pathogen (Trypanosoma) as well as its vector, the entire group of tsetse flies (Glossinidae). As the distribution of tsetse flies largely overlaps with the African hotspots of freshwater biodiversity, we argue for a strong consideration of environmental issues when applying vector control measures, especially the aerial applications of insecticides.rnFurthermore, we want to stimulate discussions on the value of speciesrnand whether full eradication of a pathogen or vector is justified at all. Finally, we call for a stronger harmonization of international conventions. Proper environmental impact assessments need to be conducted before control or eradication programs are carried out to minimize negative effects on biodiversity.
Die Fauna-Flora-Habitat-Richtlinie (Richtlinie 92/43/EWG) stellt derzeit das umfangreichste Instrument des internationalen Naturschutzes zur Erhaltung der europäischen Biodiversität dar. Das Grundkonzept der FFH-RL beruht hierbei sowohl auf dem Schutz gefährdeter Arten als auch auf dem Erhalt natürlicher Lebensräume. Dieser ganzheitliche Ansatz verursacht jedoch infolge der großen Anzahl zu berücksichtigender Schutzgüter einen hohen personellen wie finanziellen Aufwand bei der Umsetzung der Richtlinienvorgaben. Daher wurde in der vorliegenden Arbeit am Beispiel der Schmetterlingsart Euphydryas aurinia (Anhang II FFH-RL) überprüft, inwieweit die Konzepte von ESUs (Evolutionarily Significant Units) und MUs (Management Units) geeignete Möglichkeiten bieten, um die Prioritätensetzung bei der Auswahl besonders schützenswerter Vorkommen gefährdeter Arten zu erleichtern. Zu diesem Zweck wurden mit drei verschiedenen Subspezies von E. aurinia (E. aurinia beckeri, E. aurinia debilis, E. aurinia aurinia) Fang-Markierung-Wiederfangstudien durchgeführt, sowie mit Hilfe von Allozym-Elektrophoresen populationsgenetische Parametern in europäischem Kontext und auf regionaler Ebene (Westtschechien) erfasst. Die drei untersuchten Subspezies zeigten hierbei spezifische ökologische Adaptationen an die jeweiligen Habitatbedingungen (z.B. bzgl. der Populationsdichte, Demographie und Mobilität). Ferner wiesen die genetischen Analysen starke Differenzierungen bei E. aurinia in Europa nach, die u.a. Antworten auf phylogeographische und taxonomische Fragestellungen ermöglichen. Auch auf regionaler Ebene (Westtschechien) konnten genetische Differenzierungen festgestellt werden. Auf Basis der erhobenen populationsökologischen und -genetischen Daten wird abschließend die generelle Anwendbarkeit und der Nutzen der Konzepte von ESUs und MUs bei der Etablierung von Schutzkonzepten für E. aurinia und andere Arten der FFH-RL diskutiert. rnDer zweite Teil der vorliegenden Arbeit beschäftigt sich exemplarisch mit dem aktuellen Schutzverfahren für deutsche E. aurinia-Vorkommen im Rahmen der FFH-RL und den damit verbundenen Problemen. Der Schwerpunkt lag hierbei auf der Schutzgebietsauswahl, dem Monitoring und dem Gebietsmanagement. In diesem Kontext werden u.a. Problematiken angesprochen, die sich aus der großen ökologischen Variabilität der Art ergeben bzw. die aufgrund von Koordinierungsschwierigkeiten zwischen einzelnen Bundesländern bestehen. Vor dem Hintergrund dieser Erkenntnisse werden Lösungsvorschläge unterbreitet, wie das aktuelle Schutzverfahren für E. aurinia in Deutschland weiter verbessert werden könnte.
Die vorliegende Arbeit untersucht zwei grundlegende Fragestellungen im Hinblick auf den Betrieb von Genbanken als Beitrag zur Sicherung der genetischen Diversität. Das erste Kapitel behandelt aus rechtlicher Sicht die juristischen Fragen nach dem Zugang zu genetischen Ressourcen, nach dem Ausgleich aus der Nutzung entstehender Vorteile (Access and Benefit Sharing, ABS) und nach den Möglichkeiten des Handels mit Proben gefährdeter Tierarten, dies sowohl im Hinblick auf die rein wissenschaftliche Forschung als auch in Bezug auf kommerziell orientierte Zwecke. Grundlegend für die Bearbeitung dieser Fragen war die detaillierte Betrachtung des Übereinkommens über die biologische Vielfalt (CBD) und des Übereinkommens über den internationalen Handel mit gefährdeten Arten freilebender Tiere und Pflanzen (CITES). Da das CBD im Hinblick auf den Zugang zu genetischen Ressourcen in der Bundesrepublik Deutschland bisher nicht umgesetzt ist, bleibt dem Betreiber einer Genbank zur rechtlichen Absicherung und Klarheit nur die Aushandlung von Materialübertragungsverträgen mit den Ursprungsländern der genetischen Ressourcen. Der nachfolgende Handel mit gelagerten Proben gefährdeter Tierarten ist möglich, wenn dies nicht-kommerziell zur wissenschaftlichen Forschung erfolgt und die beteiligten Institutionen bei ihren Regierungen als wissenschaftliche Institutionen registriert sind. Bei kommerziellen Absichten unterliegt der Handel streng den durch das CITES vorgegebenen Regulierungen. Ausnahmen des Handelsverbotes sind möglich, z.B. dann wenn es sich um Proben von Tieren handelt, die in Gefangenschaft gezüchtet worden sind. Das zweite Kapitel behandelt aus naturwissenschaftlicher Sicht die Möglichkeit der direkten Gewinnung genetischer Materialien von Tieren. Hierbei wurde die Isolierung adulter Stammzellen aus der Haut von Säugetieren als Zielzellen zur Lagerung in Genbanken fokussiert. Am Modellorganismus Hausschwein (Sus scrofa domestica) wurde eine Methode zur Isolation adulter stammzellähnlicher Zellen aus der Haut etabliert. Durch nachfolgende Laborversuche wurden die isolierten stammzellähnlichen Zellen (pSSCs, porcine skin derived stem cell-like cells) charakterisiert. Wie mesenchymale Stammzellen haben pSSCs eine fibroblasten-ähnliche Morphologie und exprimieren die Oberflächenproteine CD9, CD29, CD44 , CD105 und sehr gering CD90. Neben diesen konnte die Expression der stammzellasoziierten Gene Stat3, Oct3/4, Sox2, Nestin, Bcrp1/ABCG2 und Bmi1 nachgewiesen werden. Weitere Versuche zeigten die induzierte Differenzierung der pSSCs zu Zellen zweier embryonaler Keimblätter, dem Ektoderm (Neuronen, Astrozyten) und dem Mesoderm (glatte Muskelzellen und Adipozyten). Zur vollständigen Charakterisierung und gänzlichen Ermittlung des Differenzierungspotentials bedarf es allerdings weiterer Versuche, die wegen der Kostspieligkeit und einem erhöhten zeitlichen Aufwand hier nicht realisierbar waren. Die Expansion und die Kryokonservierung der pSSCs zeigten geringfügige Auswirkungen auf den Phänotyp und das Differenzierungspotential. In Bezug auf die Kryokonservierung konnte wegen der geringen Anzahl an Versuchen eine definitive Aussage über ihre Folgen nicht getroffen werden. Folglich bedarf es weiterer Untersuchungen zur Ermittlung der Auswirkungen der Kryokonservierung auf adulte Stammzellen, die aus der Haut gewonnen werden können. Durch ihre Lagerung in Genbanken eröffnen aus der Haut isolierbare Stammzellen neue Möglichkeiten für den Artenschutz, dies vor allem durch ihre Anwendbarkeit im Rahmen modernster Reproduktionsmethoden und als nahezu unendliche DNA-Quelle für phylogenetische Studien, die zum Populationsmanagement unerlässlich sind. Trotz der sich aus dieser Arbeit ergebenden neuen Fragen - im Hinblick auf den Zugang, die Gewinnung und auch die Lagerung genetischer Materialien gefährdeter Tierarten -, bleibt festzuhalten, dass Genbanken generell die Möglichkeit bieten, vitales, biologisches Material bereitzuhalten. Dies ist sowohl bedeutend für die Grundlagenforschung als auch für den Einsatz dieser Materialien zur Steigerung der Reproduktion gefährdeter Arten, letztlich mit dem Ziel, genetische Variationen zu erhalten, die anderenfalls verloren gehen würden.
Der Forschungsbereich der Systembiologie hat sich in den letzten Jahren mit unvergleichlicher Dynamik entwickelt und sich als interdisziplinäres Feld in den Biowissenschaften etabliert. Die Systembiologie verfolgt hierbei unter anderem das Ziel, biologische Systeme als Ganzes zu betrachten. Die analytische Erfassung der Stoffwechselzwischenprodukte, auch Metaboliten genannt, eröffnet hierbei neue Möglichkeiten. Metaboliten stellen Zwischenprodukte in vivo ablaufender biochemischer Reaktionen dar und stehen in enger Abhängigkeit zu Vorgängen, welche auf der Ebene von Transkriptom und Proteom gesteuert und ermöglicht werden. In dieser Arbeit wurden Zeitreihen von Metabolitkonzentrationen untersucht, welche im Rahmen von Fermentationsexperimenten mit dem nicht-pathogenen Bodenbakterium Corynebacterium glutamicum erfasst worden sind. Die Fermentationsexperimente wurden auf unterschiedlichen Ausgangssubstraten durchgeführt, wobei die Erfassung der Metabolitkonzentration in äquidistanten zeitlichen Abständen gehandhabt wurde. Zur Korrektur von Messfehlern und zur optimalen Vorverarbeitung der Daten wurde ein maßgeschneidertes System der Datenprozessierung entwickelt. Eine unüberwachte Datenstrukturanalyse ergab, dass sich die Metaboliten ihrer zeitlichen Ausprägung nicht uniform oder gar zufällig verhalten, sondern sich in Gruppen unterschiedlichen Prozessverhaltens einordnen lassen. Diese unüberwachte Eingruppierung anhand der in den Zeitreihen vorhandenen Strukturen erlaubte eine erste grundlegende funktionelle Zuordnung der Metaboliten. Weiterhin konnten in den Konzentrationsdaten Strukturen gefunden werden, welche deutliche Übereinstimmungen mit den physiologischen Phasen des bakteriellen Wachstums zeigten. Die Analyse der Metabolomdaten wurde in einem nächsten Schritt durch eine theoretische Betrachtungsweise erweitert. Hierzu wurde der Stoffwechsel von C. glutamicum rechnergestützt modelliert. Zu diesem Zweck wurde eine Genomannotation durchgeführt, mit dem Ziel einen möglichst umfangreichen und qualitativ hochwertigen Katalog über das enzymatische Repertoire von C. glutamicum aus Sequenzinformation abzuleiten. Generiertes Wissen über vorhandene Enzyme wurde in biochemische Reaktionen übersetzt, welche zu Reaktionsnetzwerken zusammengefügt wurden. Die erzeugten Reaktionsnetzwerke wurden unter Verwendung graphentheoretischer Ansätze analysiert. Die integrative Analyse experimenteller und theoretischer Daten ergab, dass sich Eigenschaften von Metabolitzeitreihen deutlich topologischen Merkmalen zuordnen lassen. So zeigt sich beispielsweise, dass ein auffälliger Zusammenhang zwischen der experimentell erfassten Sensitivität im Konzentrationsverlauf eines Metaboliten und seinem theoretischen Verknüpfungsgrad existiert. Weiterhin konnte gezeigt werden, dass eine hochsignifikante Prozessähnlichkeit zwischen Metaboliten sowohl in direkter Nachbarschaft als auch in größeren Reaktionsabständen auftreten kann, jedoch vorzugsweise dann existiert, wenn beide Metaboliten ihrerseits wenige Reaktionspartner haben. Die integrative Datenanalyse wurde in einem weiteren Schritt abermals erweitert, indem Transkriptominformation weiterer Studien integriert wurde. Im Detail wurde in dieser Analyse die Prozessähnlichkeit theoretisch benachbarter Metaboliten des Zentralstoffwechsels in Zusammenschau mit der Transkription enzymkodierender Gene untersucht. Die Ergebnisse zeigten deutlich, dass eine erhöhte Prozessähnlichkeit benachbarter Metaboliten dann existiert, wenn die entsprechenden enzymkodierenden Gene in Abhängigkeit des verwendeten Ausgangssubstrates signifikant exprimiert waren. Somit konnte ein Zusammenhang zwischen der Prozessähnlichkeit benachbarter Metaboliten in Abhängigkeit zur Genexpression als Resultat substratinduzierter Anpassungsvorgänge gezeigt werden. Es konnte folglich im systembiologischen Kontext belegt werden, dass auf der Ebene des Transkriptoms stattfindende Vorgänge sich deutlich bis in die Zeitreiheneigenschaften erfasster Metabolitkonzentrationen durchpausen können. Darüber hinaus zeigte sich, dass die Berechnung paarweiser Prozessähnlichkeiten das Potenzial zur Charakterisierung der zugrundeliegenden Systemeigenschaften besitzt. So ermöglichte die Betrachtung paarweiser Prozessähnlichkeiten aus allen untersuchten Fermentationsexperimenten, signifikante substrat-induzierte Veränderungen als auch invariante Merkmale im Stoffwechsel von C. glutamicum zu detektieren.
Global change, i.e. climate and land use changes, severely impact natural ecosystems at different scales. Poikilothermic animals as butterflies, amphibians and reptiles have proven to be useful indicators for global change impacts as their phenology, spatial distribution, individual fitness and survival strongly depend on external environmental factors. In this aspect, phenological changes in terms of advanced flight or breeding periods, immigrations of foreign species, range shifts concomitant with temperature increases and even local population declines have been observed in both species groups. However, to date much attention has been paid to global change impacts on the species or population level and analyses concerning entire ecosystems are scarce. Applying a novel statistical modelling algorithm we assessed future changes in the extent and composition of terrestrial ecoregions as classified by the World Wide Fund for Nature (WWF). They are defined as coarse-scale conservation units containing exceptional assemblages of species and ecological dynamics. Our results demonstrate dramatic geographical changes in the extent and location of these ecoregions across all continents and even imply a repriorisation of conservation efforts to cope with future climate change impacts on biodiversity. On the local scale, climate change impacts become unequivocal. Comparing historical to contemporary butterfly assemblages on vineyard fallows of the Trier Region, a significant decline in butterfly richness, but also a severe depletion in trait diversity was observed. Comparisons of community temperature indices reveal a striking shift in community composition leading to a replacement of sedentary and monophagous habitat specialists by ubiquitous species. Similar changes have been observed in nature reserves in the Saar-Mosel-area. Monitoring data reveal strong losses of species diversity and remarkable shifts of community compositions at the expense of habitat specialists. Besides climatic variability, these findings are largely attributed to changes in habitat structures, mostly due to eutrophication and monotonisation. Management activities are unlikely to counterbalance these effects, thus severely questioning current conservation strategies. Most dramatic global change impacts are suspected on closely associated species and disruptions of biotic interactions are often hold responsible for species declines. A strong host-parasite association has developed in Myrmica ants and Maculinea butterflies, the later crucially depending on specific host ants for their larval survival. Applying environmental niche models we determined considerable niche dynamics in the observed parasite-host relation with a pronounced niche plasticity in the butterfly species adapting to previous evasive niche shifts in their host ants. Moreover, the new emergence of species continuously expanding their northernmost range borders concomitant with global warming like the Short-tailed blue (Cupido argiades) is attributed to climate change. However, species distribution models predict a severe habitat loss and shifts of potentially suitable habitats of this species towards north-eastern Europe and higher altitudes under several IPCC scenarios making the presence of this species in the Trier region a contemporary phenomenon. Species distribution models have emerged as powerful tools to predict species distributions over spatial and temporal scales. However, not only the presence of a species, but also its abundance have significant implications for species conservation. The ability to deduce spatial abundance patterns from environmental suitability might more efficiently guide field surveys or monitoring programs over large geographical areas saving time and money. Although the application of species distribution models to deduce vertebrate abundances is well recognized, our results indicate that this method is not an adequate approach to predict invertebrate abundances. Structural and ecological factors as well as climatic patterns acting at the microscale are key drivers of invertebrate occurrence and abundances limiting conclusions drawn from modeling approaches. Population declines should be interpreted with care as in butterflies and amphibians various reasons are debated. Both species groups are acknowledged to be highly susceptible to land use changes and variations in landscape structure. Moreover, climate and land use are not independently operating factors. The combined impact of both is demonstrated in our study linking climate-driven changes in amphibian phenologies to temporal advanced applications of pesticides and fertilizers. Both environmental factors already represent severe threats to amphibians when standing alone, but linking their combined impacts may result in an potentiated risk for amphibian populations. As all amphibians and numerous butterfly species are legally protected under the Federal Nature Conservation Act, intensifications of agricultural land use in large parts of Germany as well as new agrarian practices (including genetically manipulated plants accompanied by new herbicide technologies) might severely challenge regional conservation activities in the future.