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This thesis is focused on improving the knowledge on a group of threatened species, the European cave salamanders (genus Hydromantes). There are three main sections gathering studies dealing with different topics: Ecology (first part), Life traits (second part) and Monitoring methodologies (third part). First part starts with the study of the response of Hydromantes to the variation of climatic conditions, analysing 15 different localities throughout a full year (CHAPTER I; published in PEERJ in August 2015). After that, the focus moves on identify which is the operative temperature that these salamander experience, including how their body respond to variation of environmental temperature. This study was conducted using one of the most advanced tool, an infrared thermocamera, which gave the opportunity to perform detailed observation on salamanders body (CHAPTER II; published in JOURNAL OF THERMAL BIOLOGY in June 2016). In the next chapter we use the previous results to analyse the ecological niche of all eight Hydromantes species. The study mostly underlines the mismatch between macro- and microscale analysis of ecological niche, showing a weak conservatism of ecological niches within the evolution of species (CHAPTER III; unpublished manuscript). We then focus only on hybrids, which occur within the natural distribution of mainland species. Here, we analyse if the ecological niche of hybrids shows divergences from those of parental species, thus evaluating the power of hybrids adaptation (CHAPTER IV; unpublished manuscript). Considering that hybrids may represent a potential threat for parental species (in terms of genetic erosion and competition), we produced the first ecological study on an allochthonous mixed population of Hydromantes, analysing population structure, ecological requirements and diet. The interest on this particular population mostly comes by the fact that its members are coming from all three mainland Hydromantes species, and thus it may represent a potential source of new hybrids (CHAPTER V; accepted in AMPHIBIA-REPTILIA in October 2017). The focus than moves on how bioclimatic parameters affect species within their distributional range. Using as model species the microendemic H. flavus, we analyse the relationship between environmental suitability and local abundance of the species, also focusing on all intermediate dynamics which provide useful information on spatial variation of individual fitness (CHAPTER VI; submitted to SCIENTIFIC REPORTS in November 2017). The first part ends with an analysis of the interaction between Hydromantes and Batracobdella algira leeches, the only known ectoparasite for European cave salamanders. Considering that the effect of leeches on their hosts is potentially detrimental, we investigated if these ectoparasites may represent a further threat for Hydromantes (CHAPTER VII; submitted to INTERNATIONAL JOURNAL FOR PARASITOLOGY: PARASITES AND WILDLIFE in November 2017). The second part is related to the reproduction of Hydromantes. In the first study we perform analyses on the breeding behaviour of several females belonging to a single population, identifying differences and similarities occurring in cohorting females (CHAPTER VIII; published in NORTH-WESTERN JOURNAL OF ZOOLOGY in December 2015). In the second study we gather information from all Hydromantes species, analysing size and development of breeding females, and identifying a relationship between breeding time and climatic conditions (CHAPTER IX; submitted to SALAMANDRA in June 2017). In the last part of this thesis, we analyse two potential methods for monitoring Hydromantes populations. In the first study we evaluate the efficiency of the marking method involving Alpha tags (CHAPTER X; published in SALAMANDRA in October 2017). In the second study we focus on evaluating N-mixtures models as a methodology for estimating abundance in wild populations (CHAPTER XI; submitted to BIODIVERSITY & CONSERVATION in October 2017).
Dry tropical forests are facing massive conversion and degradation processes and they are the most endangered forest type worldwide. One of the largest dry forest types are Miombo forests that stretch across the Southern African subcontinent and the proportionally largest part of this type can be found in Angola. The study site of this thesis is located in south-central Angola. The country still suffers from the consequences of the 27 years of civil war (1975-2002) that provides a unique socio-economic setting. The natural characteristics are a representative cross section which proved ideal to study underlying drivers as well as current and retrospective land use change dynamics. The major land change dynamic of the study area is the conversion of Miombo forests to cultivation areas as well as modification of forest areas, i.e. degradation, due to the extraction of natural resources. With future predictions of population growth, climate change and large scale investments, land pressure is expected to further increase. To fully understand the impacts of these dynamics, both, conversion and modification of forest areas were assessed. By using the conceptual framework of ecosystem services, the predominant trade-off between food and timber in the study area was analyzed, including retrospective dynamics and impacts. This approach accounts for products that contribute directly or indirectly to human well-being. For this purpose, data from the Landsat archive since 1989 until 2013 was applied in different study area adapted approaches. The objectives of these approaches were (I) to detect underlying drivers and their temporal and spatial extent of impact, (II) to describe modification and conversion processes that reach from times of armed conflicts over the ceasefire and the post-war period and (III) to provide an assessment of drivers and impacts in a comparative setting. It could be shown that major underlying drivers for the conversion processes are resettlement dynamics as well as the location and quality of streets and settlements. Furthermore, forests that are selectively used for resource extraction have a higher chance of being converted to a field. Drivers of forest degradation are on one hand also strongly connected to settlement and infrastructural structures. But also to a large extent to fire dynamics that occur mostly in more remote and presumably undisturbed forest areas. The loss of woody biomass as well as its slow recovery after the abandonment of fields could be quantified and stands in large contrast to the amount of potentially cultivated food that is necessarily needed. The results of the thesis support the fundamental understanding of drivers and impacts in the study area and can thus contribute to a sustainable resource management.
Water-deficit stress, usually shortened to water- or drought stress, is one of the most critical abiotic stressors limiting plant growth, crop yield and quality concerning food production. Today, agriculture consumes about 80-90% of the global freshwater used by humans and about two thirds are used for crop irrigation. An increasing world population and a predicted rise of 1.0-2.5-°C in the annual mean global temperature as a result of climate change will further increase the demand of water in agriculture. Therefore, one of the most challenging tasks of our generation is to reduce the amount water used per unit yield to satisfy the second UN Sustainable Development Goal and to ensure global food security. Precision agriculture offers new farming methods with the goal to improve the efficiency of crop production by a sustainable use of resources. Plant responses to water stress are complex and co-occur with other environmental stresses under natural conditions. In general, water stress causes plant physiological and biochemical changes that depend on the severity and the duration of the actual plant water deficit. Stomatal closure is one of the first responses to plant water stress causing a decrease in plant transpiration and thus an increase in plant temperature. Prolonged or severe water stress leads to irreversible damage to the photosynthetic machinery and is associated with decreasing chlorophyll content and leaf structural changes (e.g., leaf rolling). Since a crop can already be irreversibly damaged by only mild water deficit, a pre-visual detection of water stress symptoms is essential to avoid yield loss. Remote sensing offers a non-destructive and spatio-temporal method for measuring numerous physiological, biochemical and structural crop characteristics at different scales and thus is one of the key technologies used in precision agriculture. With respect to the detection of plant responses to water stress, the current state-of-the-art hyperspectral remote sensing imaging techniques are based on measurements of thermal infrared emission (TIR; 8-14 -µm), visible, near- and shortwave infrared reflectance (VNIR/SWIR; 0.4-2.5 -µm), and sun-induced fluorescence (SIF; 0.69 and 0.76 -µm). It is, however, still unclear how sensitive these techniques are with respect to water stress detection. Therefore, the overall aim of this dissertation was to provide a comparative assessment of remotely sensed measures from the TIR, SIF, and VNIR/SWIR domains for their ability to detect plant responses to water stress at ground- and airborne level. The main findings of this thesis are: (i) temperature-based indices (e.g., CWSI) were most sensitive for the detection of plant water stress in comparison to reflectance-based VNIR/SWIR indices (e.g., PRI) and SIF at both, ground- and airborne level, (ii) for the first time, spectral emissivity as measured by the new hyperspectral TIR instrument could be used to detect plant water stress at ground level. Based on these findings it can be stated that hyperspectral TIR remote sensing offers great potential for the detection of plant responses to water stress at ground- and airborne level based on both TIR key variables, surface temperature and spectral emissivity. However, the large-scale application of water stress detection based on hyperspectral TIR measures in precision agriculture will be challenged by several problems: (i) missing thresholds of temperature-based indices (e.g., CWSI) for the application in irrigation scheduling, (ii) lack of current TIR satellite missions with suitable spectral and spatial resolution, (iii) lack of appropriate data processing schemes (including atmosphere correction and temperature emissivity separation) for hyperspectral TIR remote sensing at airborne- and satellite level.
This study aims to estimate the cotton yield at the field and regional level via the APSIM/OZCOT crop model, using an optimization-based recalibration approach based on the state variable of the cotton canopy - the leaf area index (LAI), derived from atmospherically corrected Landsat-8 OLI remote sensing images in 2014. First, a local sensitivity and global analysis approach was employed to test the sensitivity of cultivar, soil and agronomic parameters to the dynamics of the LAI. After sensitivity analyses, a series of sensitive parameters were obtained. Then, the APSIM/OZCOT crop model was calibrated by observations over a two-year span (2006-2007) at the Aksu station, combined with these sensitive cultivar parameters and the current understanding of cotton cultivar parameters. Third, the relationship between the observed in-situ LAI and synchronous perpendicular vegetation indices derived from six Landsat-8 OLI images covering the entire growth stage was modelled to generate LAI maps in time and space. Finally, the Particle Swarm Optimization (PSO) and general-purpose optimization approach (based on Nelder-Mead algorithm) were used to recalibrate four sensitive agronomic parameters (row spacing, sowing density per row, irrigation amount and total fertilization) according to the minimization of the root-mean-square deviation (RMSE) between the simulated LAI from the APSIM/OZCOT model and retrieved LAI from Landsat-8 OLI remote sensing images. After the recalibration, the best simulated results compared with observed cotton yield were obtained. The results showed that: (1) FRUDD, FLAI and DDISQ were the major cultivar parameters suitable for calibrating the cotton cultivar. (2) After the calibration, the simulated LAI performed well with an RMSE and mean absolute error (MAE) of 0.45 and 0.33, respectively, in 2006 and 0.46 and 0.41, respectively, in 2007. The coefficient of determination between the observed and simulated LAI was 0.83 and 0.97, respectively, in 2006 and 2007. The Pearson- correlation coefficient was 0.913 and 0.988 in 2006 and 2007, respectively, with a significant positive correlation between the simulated and observed LAI. The difference between the observed and simulated yield was 776.72 kg/ha and 259.98 kg/ha in 2006 and 2007, respectively. (3) Cotton cultivation in 2014 was obtained using three Landsat-8 OLI images - DOY136 (May), DOY 168 (June) and DOY 200 (July) - based on the phenological differences in cotton and other vegetation types. (4) The yield estimation after the assimilation closely approximated the field-observed values, and the coefficient of determination was as high as 0.82, after recalibration of the APSIM/OZCOT model for ten cotton fields. The difference between the observed and assimilated yields for the ten fields ranged from 18.2 to 939.7 kg/ha. The RMSE and MAE between the assimilated and observed yield was 417.5 and 303.1 kg/ha, respectively. These findings provide scientific evidence for the feasibility of coupled remote sensing and APSIM/OZCOT model at the field level. (5) Upscaling from field level to regional level, the assimilation algorithm and scheme are both especially important. Although the PSO method is very efficient, the computational efficiency is also the shortcoming of the assimilation strategy on a regional scale. Comparisons between the PSO and general-purpose optimization method (based on the Nelder-Mead algorithm) were implemented from the RSME, LAI curve and computational time. The general-purpose optimization method (based on the Nelder-Mead algorithm) was used for the regional assimilation between remote sensing and the APSIM/OZCOT model. Meanwhile, the basic unit for regional assimilation was also determined as cotton field rather than pixel. Moreover, the crop growth simulation was also divided into two phases (vegetative growth and reproductive growth) for regional assimilation. (6) The regional assimilation at the vegetative growth stage between the remote sensing derived and APSIM/OZCOT model-simulated LAI was implemented by adjusting two parameters: row spacing and sowing density per row. The results showed that the sowing density of cotton was higher in the southern part than in the northern part of the study area. The spatial pattern of cotton density was also consistent with the reclamation from 2001 to 2013. Cotton fields after early reclamation were mainly located in the southern part while the recent reclamation was located in the northern part. Poor soil quality, lack of irrigation facilities and woodland belts of cotton fields in the northern part caused the low density of cotton. Regarding the row spacing, the northern part was larger than the southern part due to the variation of two agronomic modes from military and private companies. (7) The irrigation and fertilization amount were both used as key parameters to be adjusted for regional assimilation during the reproductive growth period. The result showed that the irrigation per time ranged from 58.14 to 89.99 mm in the study area. The spatial distribution of the irrigation amount is higher in the northern part while lower in southern study area. The application of urea fertilization ranged from 500.35 to 1598.59 kg/ha in the study area. The spatial distribution of fertilization was lower in the northern part and higher in the southern part. More fertilization applied in the southern study area aims to increase the boll weight and number for pursuing higher yields of cotton. The frequency of the RSME during the second assimilation was mainly located in the range of 0.4-0.6 m2/m2. The estimated cotton yield ranged from 1489 to 8895 kg/ha. The spatial distribution of the estimated yield is also higher in the southern part than the northern study area.
In recent decades, the Arctic has been undergoing a wide range of fast environmental changes. The sea ice covering the Arctic Ocean not only reacts rapidly to these changes, but also influences and alters the physical properties of the atmospheric boundary layer and the underlying ocean on various scales. In that regard, polynyas, i.e. regions of open water and thin ice within thernclosed pack ice, play a key role as being regions of enhanced atmosphere-ice-ocean interactions and extensive new ice formation during winter. A precise long-term monitoring and increased efforts to employ long-term and high-resolution satellite data is therefore of high interest for the polar scientific community. The retrieval of thin-ice thickness (TIT) fields from thermal infrared satellite data and atmospheric reanalysis, utilizing a one-dimensional energy balance model, allows for the estimation of the heat loss to the atmosphere and hence, ice-production rates. However, an extended application of this approach is inherently connected with severe challenges that originate predominantly from the disturbing influence of clouds and necessary simplifications in the model set-up, which all need to be carefully considered and compensated for. The presented thesis addresses these challenges and demonstrates the applicability of thermal infrared TIT distributions for a long-term polynya monitoring, as well as an accurate estimation of ice production in Arctic polynyas at a relatively high spatial resolution. Being written in a cumulative style, the thesis is subdivided into three parts that show the consequent evolution and improvement of the TIT retrieval, based on two regional studies (Storfjorden and North Water (NOW) polynya) and a final large-scale, pan-Arctic study. The first study on the Storfjorden polynya, situated in the Svalbard archipelago, represents the first long-term investigation on spatial and temporal polynya characteristics that is solely based on daily TIT fields derived from MODIS thermal infrared satellite data and ECMWF ERA-Interim atmospheric reanalysis data. Typical quantities such as polynya area (POLA), the TIT distribution, frequencies of polynya events as well as the total ice production are derived and compared to previous remote sensing and modeling studies. The study includes a first basic approach that aims for a compensation of cloud-induced gaps in daily TIT composites. This coverage-correction (CC) is a mathematically simple upscaling procedure that depends solely on the daily percentage of available MODIS coverage and yields daily POLA with an error-margin of 5 to 6 %. The NOW polynya in northern Baffin Bay is the main focus region of the second study, which follows two main goals. First, a new statistics-based cloud interpolation scheme (Spatial Feature Reconstruction - SFR) as well as additional cloud-screening procedures are successfully adapted and implemented in the TIT retrieval for usage in Arctic polynya regions. For a 13-yr period, results on polynya characteristics are compared to the CC approach. Furthermore, an investigation on highly variable ice-bridge dynamics in Nares Strait is presented. Second, an analysis of decadal changes of the NOW polynya is carried out, as the additional use of a suite of passive microwave sensors leads to an extended record of 37 consecutive winter seasons, thereby enabling detailed inter-sensor comparisons. In the final study, the SFR-interpolated daily TIT composites are used to infer spatial and temporal characteristics of 17 circumpolar polynya regions in the Arctic for 2002/2003 to 2014/2015. All polynya regions combined cover an average thin-ice area of 226.6 -± 36.1 x 10-³ km-² during winter (November to March) and yield an average total wintertime accumulated ice production of about 1811 -± 293 km-³. Regional differences in derived ice production trends are noticeable. The Laptev Sea on the Siberian shelf is presented as a focus region, as frequently appearing polynyas along the fast-ice edge promote high rates of new ice production. New affirming results on a distinct relation to sea-ice area export rates and hence, the Transpolar Drift, are shown. This new high-resolution pan-Arctic data set can be further utilized and build upon in a variety of atmospheric and oceanographic applications, while still offering room for further improvements such as incorporating high-resolution atmospheric data sets and an optimized lead-detection.
Earth observation (EO) is a prerequisite for sustainable land use management, and the open-data Landsat mission is at the forefront of this development. However, increasing data volumes have led to a "digital-divide", and consequently, it is key to develop methods that account for the most data-intensive processing steps, then used for the generation and provision of analysis-ready, standardized, higher-level (Level 2 and Level 3) baseline products for enhanced uptake in environmental monitoring systems. Accordingly, the overarching research task of this dissertation was to develop such a framework with a special emphasis on the yet under-researched drylands of Southern Africa. A fully automatic and memory-resident radiometric preprocessing streamline (Level 2) was implemented. The method was applied to the complete Angolan, Zambian, Zimbabwean, Botswanan, and Namibian Landsat record, amounting 58,731 images with a total data volume of nearly 15 TB. Cloud/shadow detection capabilities were improved for drylands. An integrated correction of atmospheric, topographic and bidirectional effects was implemented, based on radiative theory with corrections for multiple scatterings, and adjacency effects, as well as including a multilayered toolset for estimating aerosol optical depth over persistent dark targets or by falling back on a spatio-temporal climatology. Topographic and bidirectional effects were reduced with a semi-empirical C-correction and a global set of correction parameters, respectively. Gridding and reprojection were already included to facilitate easy and efficient further processing. The selection of phenologically similar observations is a key monitoring requirement for multi-temporal analyses, and hence, the generation of Level 3 products that realize phenological normalization on the pixel-level was pursued. As a prerequisite, coarse resolution Land Surface Phenology (LSP) was derived in a first step, then spatially refined by fusing it with a small number of Level 2 images. For this purpose, a novel data fusion technique was developed, wherein a focal filter based approach employs multi-scale and source prediction proxies. Phenologically normalized composites (Level 3) were generated by coupling the target day (i.e. the main compositing criterion) to the input LSP. The approach was demonstrated by generating peak, end and minimum of season composites, and by comparing these with static composites (fixed target day). It was shown that the phenological normalization accounts for terrain- and land cover class-induced LSP differences, and the use of Level 2 inputs enables a wide range of monitoring options, among them the detection of within state processes like forest degradation. In summary, the developed preprocessing framework is capable of generating several analysis-ready baseline EO satellite products. These datasets can be used for regional case studies, but may also be directly integrated into more operational monitoring systems " e.g. in support of the Reducing Emissions from Deforestation and Forest Degradation (REDD) incentive. In reference to IEEE copyrighted material which is used with permission in this thesis, the IEEE does not endorse any of Trier University's products or services. Internal or personal use of this material is permitted. If interested in reprinting/republishing IEEE copyrighted material for advertising or promotional purposes or for creating new collective works for resale or redistribution, please go to http://www.ieee.org/publications_standards/publications/rights/rights_link.html to learn how to obtain a License from RightsLink.
The development of our society contributed to increased occurrence of emerging substances (pesticides, pharmaceuticals, personal care products, etc.) in wastewater. Because of their potential hazard on ecosystems and humans, Wastewater Treatment Plants (WWTPs) need to adapt to better remove these compounds. Technology or policy development should however comply with sustainable development, e.g. based on Life Cycle Assessment (LCA) metrics. Nevertheless, the reliability or consistency of LCA results can sometimes be debatable. The main objective of this work was to explore how LCA can better support the implementation of innovative wastewater treatment options, in particular including removal benefits. The method was applied to support solutions for pharmaceuticals elimination from wastewater, regarding: (i) UV technology design, (ii) choice of advanced technology and (iii) centralized or decentralized treatment policy. The assessment approach followed by previous authors based on net impacts calculation seemed very promising to consider both environmental effects induced by treatment plant operation and environmental benefits obtained from pollutants removal. It was therefore applied to compare UV configuration types. LCA outcomes were consistent with degradation kinetics analysis. For the comparison of advanced technologies and policy scenarios, the common practice (net impacts based on EDIP method) was compared to other assessments, to better consider elimination benefits. First, USEtox consensus was applied for the avoided (eco)toxicity impacts, in combination with the recent method ReCiPe for generated impacts. Then, an eco-efficiency indicator (EFI) was developed to weigh the treatment efforts (generated impacts based on EDIP and ReCiPe methods) by the average removal efficiency (overcoming (eco)toxicity uncertainty issues). In total, the four types of comparative assessment showed the same trends: (i) ozonation and activated carbon perform better than UV irradiation, and (ii) no clear advantage distinguished between policy scenarios. It cannot be however concluded that advanced treatment of pharmaceuticals is not necessary because other criteria should be considered (risk assessment, bacterial resistance, etc.) and large uncertainties were embedded in calculations. Indeed, a significant part of this work was dedicated to the discussion of uncertainty and limitations of the LCA outcomes. At the inventory level, it was difficult to model technology operation at development stage. For impact assessment, the newly developed characterization factors for pharmaceuticals (eco)toxicity showed large uncertainties, mainly due to the lack of data and quality for toxicity tests. The use of information made available under REACH framework to develop CFs for detergent ingredients tried to cope with this issue but the benefits were limited due to the mismatch of information between REACH and USEtox method. The highlighted uncertainties were treated with sensitivity analyses to understand their effects on LCA results. This research work finally presents perspectives on the use of transparently generated data (technology inventory and (eco)toxicity factors) and further development of EFI indicator. Also, an accent is made on increasing the reliability of LCA outcomes, in particular through the implementation of advanced techniques for uncertainty management. To conclude, innovative technology/product development (e.g. based on circular economy approach) needs the involvement of all types of actors and the support from sustainability metrics.
Besides well-known positive aspects of conservation tillage combined with mulching, a drawback may be the survival of phytopathogenic fungi like Fusarium species on plant residues. This may endanger the health of the following crop by increasing the infection risk for specific plant diseases. In infected plant organs, these pathogens are able to produce mycotoxins like deoxynivalenol (DON). Mycotoxins like DON persist during storage, are heat resistant and of major concern for human and animal health after consumption of contaminated food and feed, respectively. Among fungivorous soil organisms, there are representatives of the soil fauna which are obviously antagonistic to a Fusarium infection and the contamination with mycotoxins. Earthworms (Lumbricus terrestris), collembolans (Folsomia candida) and nematodes (Aphelenchoides saprophilus) provide a wide range of ecosystem services including the stimulation of decomposition processes which may result in the regulation of plant pathogens and the degradation of environmental contaminants. Several investigations under laboratory conditions and in the field were conducted to test the following hypotheses: (1) Fusarium-infected and DON-contaminated wheat straw provides a more attractive food substrate than non-infected control straw (2) the introduced soil fauna reduce the biomass of F. culmorum and the content of DON in infected wheat straw under laboratory and field conditions (3) the species interaction of the introduced soil fauna enhances the degradation of Fusarium biomass and DON concentration in wheat straw; (4) the degradation efficiency of soil fauna is affected by soil texture. The results of the present thesis pointed out that the degradation performance of the introduced soil fauna must be considered as an important contribution to the biological control of plant diseases and environmental pollutants. As in particular L. terrestris revealed to be the driver of the degradation process, earthworms contribute to a sustainable control of fungal pathogens like Fusarium and its mycotoxins in wheat straw, thus reducing the risk of plant diseases and environmental pollution as ecosystem services.
Exposure to fine and ultra-fine environmental particles is still a problem of concern in many industrialized parts of the world and the intensified use of nanotechnology may further increase exposure to small particles. Since many years air pollution is recognized as a critical problem in western countries, which led to rigorous regulation of air quality and the introduction of strict guidelines. However, the upper thresholds for particulates in ambient air recommended by the world health organization are often exceeded several times in newly industrialized countries. Such high levels of air pollution have the potential to induce adverse effects on human health. The response triggered by air pollutants is not limited to local effects of the respiratory system but is often systemic, resulting in endothelial dysfunction or atherosclerotic malady. The link between air pollution and cardiovascular disease is now accepted by the scientific community but the underlying mechanisms responsible for the pro-atherogenic potential still need to be unraveled in detail. Based on the results from in- vivo and in vitro studies the production of reactive oxygen species due to exposure to particles is the most important mechanism to explain the observed adverse effects. However, the doses that were applied in many in vivo and in vitro studies are far beyond the range of what humans are exposed to and there is the need for more realistic exposure studies. Complex in vitro coculture systems may be valuable tools to study particle-induced processes and to extrapolate effects of particles on the lung. One of the objectives of this PhD thesis was the establishment and further improvement of a complex coculture system initially described by Alfaro-Moreno et al. [1]. The system is composed of an alveolar type-II cell line (A549), differentiated macrophage-like cells (THP-1), mast cells (HMC-1) and endothelial cells (EA.hy 926), seeded in a 3D-orientation on a microporous membrane to mimic the cell response of the alveolar surface in vitro in conjunction with native aerosol exposure (VitrocellTM chamber). The tetraculture system was carefully characterized to ensure its performance and repeatability of results. The spatial distribution of the cells in the tetraculture was analyzed by confocal laser scanning microscopy (CLSM), showing a confluent layer of endothelial and epithelial cells on both sides of the Transwellâ„¢. Macrophage-like cells and mast cells can be found on top of the epithelial cells. The latter cells formed colonies under submerged conditions, which disappeared at the air-liquid-interface (ALI). The VitrocellTM aerosol exposure system was not significantly influencing the viability. Using this system, cells were exposed to an aerosol of 50 nm SiO2-Rhodamine nanoparticles (NPs) in PBS. The distribution of the NPs in the tetraculture after exposure was evaluated by CLSM. Fluorescence from internalized particles was detected in CD11b-positive THP-1 cells only. Furthermore, all cell lines were found to be able to respond to xenobiotic model compounds, such as benzo[a]pyrene (B[a]P) or 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) with the upregulation of CYP1 mRNA. With this tetraculture system the response of the endothelial part of the alveolar barrier was studied in- vitro in a still realistic exposure scenario representing the conditions for a polluted situation without direct exposure of endothelial cells. After exposure to diesel exhaust particulate matter (DEPM) the expression of different anti-oxidant target genes and inflammatory genes such as NAD(P)H dehydrogenase quinone 1 (NQO1), superoxide dismutase 1 (SOD1) and heme oxygenase 1 (HMOX1), as well as the nuclear translocation nuclear factor erythroid-derived 2 (Nrf2) was evaluated. In addition, the potential of DEPM to induce the upregulation of CYP1A1 mRNA in the endothelium was analyzed. DEPM exposure led not to an upregulation of the anti-oxidant or inflammatory target genes, but to clear nuclear translocation of Nrf2. The endothelial cells responded to the DEPM treatment also with the upregulation of CYP1A1 mRNA and nuclear translocation of the aryl hydrocarbon receptor (AhR). Overall, DEPM triggered a response in the endothelial cells after indirect exposure of the tetraculture system to low doses of DEPM, underlining the sensitivity of ALI exposure systems. The use of the tetraculture together with the native aerosol exposure equipment may finally lead to a more realistic judgment regarding the hazard of new compounds and/or new nano-scaled materials in the future. For the first time, it was possible to study the response of the endothelial cells of the alveolar barrier in vitro in a realistic exposure scenario avoiding direct exposure of endothelial cells to high amounts of particulates.
Floods are hydrological extremes that have enormous environmental, social and economic consequences.The objective of this thesis was a contribution to the implementation of a processing chain that integrates remote sensing information into hydraulic models. Specifically, the aim was to improve water elevation and discharge simulations by assimilating microwave remote sensing-derived flood information into hydraulic models. The first component of the proposed processing chain is represented by a fully automated flood mapping algorithm that enables the automated, objective, and reliable flood extent extraction from Synthetic Aperture Radar images, providing accurate results in both rural and urban regions. The method operates with minimum data requirements and is efficient in terms of computational time. The map obtained with the developed algorithm is still subject to uncertainties, both introduced by the flood mapping algorithm and inherent in the image itself. In this work, particular attention was given to image uncertainty deriving from speckle. By bootstrapping the original satellite image pixels, several synthetic images were generated and provided as input to the developed flood mapping algorithm. From the analysis performed on the mapping products, speckle uncertainty can be considered as a negligible component of the total uncertainty. In the final step of the proposed processing chain real event water elevations, obtained from satellite observations, were assimilated in a hydraulic model with an adapted version of the Particle Filter, modified to work with non-Gaussian distribution of observations. To deal with model structure error and possibly biased observations, a global and a local weight variant of the Particle Filter were tested. The variant to be preferred depends on the level of confidence that is attributed to the observations or to the model. This study also highlighted the complementarity of remote sensing derived and in-situ data sets. An accurate binary flood map represents an invaluable product for different end users. However, deriving from this binary map additional hydraulic information, such as water elevations, is a way of enhancing the value of the product itself. The derived data can be assimilated into hydraulic models that will fill the gaps where, for technical reasons, Earth Observation data cannot provide information, also enabling a more accurate and reliable prediction of flooded areas.
Evapotranspiration (ET) is one of the most important variables in hydrological studies. In the ET process, energy exchange and water transfer are involved. ET consists of transpiration and evaporation. The amount of plants transpiration dominates in ET. Especially in the forest regions, the ratio of transpiration to ET is in general 80-90 %. Meteorological variables, vegetation properties, precipitation and soil moisture are critical influence factors for ET generation. The study area is located in the forest area of Nahe catchment (Rhineland-Palatinate, Germany). The Nahe catchment is highly wooded. About 54.6 % of this area is covered by forest, with deciduous forest and coniferous forest are two primary types. A hydrological model, WaSiM-ETH, was employed for a long-term simulation from 1971-2003 in the Nahe catchment. In WaSiM-ETH, the potential evapotranspiration (ETP) was firstly calculated by the Penman-Monteith equation, and subsequently reduced according to the soil water content to obtain the actual evapotranspiration (ETA). The Penman-Monteith equation has been widely used and recommended for ETP estimation. The difficulties in applying this equation are the high demand of ground-measured meteorological data and the determination of surface resistance. A method combined remote sensing images with ground-measured meteorological data was also used to retrieve the ETA. This method is based on the surface properties such as surface albedo, fractional vegetation cover (FVC) and land surface temperature (LST) to obtain the latent heat flux (LE, corresponding to ETA) through the surface energy balance equation. LST is a critical variable for surface energy components estimation. It was retrieved from the TM/ETM+ thermal infrared (TIR) band. Due to the high-quality and cloudy-free requirements for TM/ETM+ data selection as well as the overlapping cycle of TM/ETM+ sensor is 16 days, images on only five dates are available during 1971-2003 (model ran) " May 15, 2000, July 05, 2001, July 19, August 04 and September 21 in 2003. It is found that the climate conditions of 2000, 2001 and 2003 are wet, medium wet and dry, respectively. Therefore, the remote sensing-retrieved observations are noncontinuous in a limited number over time but contain multiple climate conditions. Aerodynamic resistance and surface resistance are two most important parameters in the Penman-Monteith equation. However, for forest area, the aerodynamic resistance is calculated by a function of wind speed in the model. Since transpiration and evaporation are separately calculated by the Penman-Monteith equation in the model, the surface resistance was divided into canopy surface resistance rsc and soil surface resistance rse. rsc is related to the plants transpiration and rse is related to the bare soil evaporation. The interception evaporation was not taken into account due to its negligible contribution to ET rate under a dry-canopy (no rainfall) condition. Based on the remote sensing-retrieved observations, rsc and rse were calibrated in the WaSiM-ETH model for both forest types: for deciduous forest, rsc = 150 sm−1, rse = 250 sm−1; for coniferous forest, rsc = 300 sm−1, rse = 650 sm−1. We also carried out sensitivity analysis on rsc and rse. The appropriate value ranges of rsc and rse were determined as (annual maximum): for deciduous forest, [100,225] sm−1 for rsc and [50,450] sm−1 for rse; for coniferous forest, [225,375] sm−1 for rsc and [350,1200] sm−1 for rse. Due to the features of the observations that are in a limited number but contain multiple climate conditions, the statistical indices for model performance evaluation are required to be sensitive to extreme values. In this study, boxplots were found to well exhibit the model performance at both spatial and temporal scale. Nush-Sutcliffe efficiency (NSE), RMSE-observations standard deviation ratio (RSR), percent bias (PBIAS), mean bias error (MBE), mean variance of error distribution (S2d), index of agreement (d), root mean square error (RMSE) were found as appropriate statistical indices to provide additional evaluation information to the boxplots. The model performance can be judged as satisfactory if NSE > 0.5, RSR ≤ 0.7, PBIAS < -±12, MBE < -±0.45, S2d < 1.11, d > 0.79, RMSE < 0.97. rsc played a more important role than rse in ETP and ETA estimation by the Penman-Monteith equation, which is attributed to the fact that transpiration dominates in ET. The ETP estimation was found the most correlated to the relative humidity (RH), followed by air temperature (T), relative sunshine duration (SSD) and wind speed (WS). Under wet or medium wet climate conditions, ETA estimation was found the most correlated to T, followed by RH, SSD and WS. Under a water-stress condition, there were very small correlations between ETA and each meteorological variable.
Climate change and habitat fragmentation modify the natural habitat of many wetland biota and lead to new compositions of biodiversity in these ecosystems. While the direct effects of climate are often well known, indirect effects due to biotic interactions remain poorly understood. The water meadow grasshopper, Chorthippus montanus, is a univoltine habitat specialist, which is adapted to permanently moist habitats. Land use change and drainage led to highly fragmented populations of this generally flightless species. In large parts of the Palaearctic Ch. montanus occurs sympatrically with its widespread congener, the meadow grasshopper Chorthippus parallelus. Due to their close relationship and their similar songs, hybridization is likely to occur in syntopic populations. Such a species pair of a habitat specialist and a habitat generalist represents an ideal model system to examine the role of ongoing climate change and an accumulation of extreme climatic events on the life history strategies, population dynamics and inter-specific interactions. In Chapter I a laboratory experiment was conducted to identify the impact of environmental factors on intra-specific life-history traits of Ch. montanus. Like other Orthoptera species, Ch. montanus follows a converse temperature size rule. In line with the dimorphic niche hypothesis, which states that sexual size dimorphism evolved in response to the different sexual reproductive roles, both sexes showed different responses to increasing density at lower temperatures. Males attained smaller body sizes at high densities, whereas females had a prolonged development time. This is the first evidence for a sex-specific phenotypic plasticity in Ch. montanus. Females benefit from the prolonged development as their reproductive success depends on the size and number of egg clutches they may produce. By contrast, the reproductive success of males depends on the chance to fertilize virgin females, which increases with faster development. This may become a disadvantage for Ch. montanus as an intraspecific phenology shift may increase hybridization risk with the sibling species. Despite the widespread assumption that hybridization between two sympatric species is rare due to complete reproductive barriers, the genetic analyses of 16 populations (Chapter II) provided evidence for wide prevalence of hybridization between both species in the wild. As no complete admixture was found in the examined population, it is assumed that hybridization only occurs in ecotones between wetlands and drier parts. Reproductive barriers (habitat isolation, behavior, phenology) seem to prevent the genetic swamping of Ch. montanus populations. Although a behavioral experiment showed that mate choice presents an important reproductive barrier between both species, the experiment also revealed that reproductive barriers could be altered by environmental change (e.g. increasing heterospecific frequency). Chapter III analyzes the impact of extreme climatic events on population dynamics and interspecific hybridization. A mark-recapture analysis combined with weather records over five years provides evidence that the embryonic development in Ch. montanus is vulnerable to extreme climatic events. Strong population declines in Ch. montanus lead to a disequilibrium between Ch. montanus and Ch. parallelus populations and increases the risk of hybridization. The highest hybridization risk was found in the first weeks of a season, when both species had an overlapping phenology. Furthermore, hybrids were generally localized at the edge of the Ch. montanus distribution with higher heterospecific encounter probabilities. The hybridization rate reached up to 19.6%. The genetic analyses in Chapter II and III show that hybridization differentially affects specialists and generalists. While generalists may benefit from hybridization by an increasing genetic diversity, such a positive correlation was not found for Ch. montanus. The results underline the importance of reproductive barriers for the co-existence of these sympatric species. However, climate change and other anthropogenic disturbances alter reproductive barriers and promote hybridization, which may threaten small populations by genetic displacement. As anthropogenic hybridization is recognized as a major threat to biodiversity, it should be considered in environmental law and policy. In Chapter IV the role of hybrids and hybridization in three levels of law and the historical backgrounds of hybrids becoming a part of legal instruments is analyzed. Due to legal uncertainties and the complexity of this topic a legal assessment of hybrids is challenging and argues for species-specific approaches. Nonetheless, existing legal norms provide a suitable basis, but need to be specified. Finally, this chapter discusses different opportunities for the management of hybrids and hybridization in a conservation perspective and their necessity.
Evaluation of desalination techniques for treating the brackish water of Olushandja sub-basin
(2014)
The groundwater of Olushandja sub-basin as part of Cuvelai basin in central-northern Namibia is saline with TDS content varying between 4,000ppm to 90,000ppm. Based on climatic conditions, this region can be classified as a semi-arid to arid region with an annual rainfall during summer time varying between 200mm to 500mm. The mean annual evaporation potential is about 2,800mm, which is much higher than the annual rainfall. The southern block of this sub-basin is of low population density. It has not been covered by the supply networks for electricity and water. Therefore, the inhabitants are forced to use the untreated groundwater from the hand-dug wells for their daily purposes. This groundwater is not safe for human consumption and therefore needs to be desalinated for that purpose. The goal of this thesis has been to select a suitable desalination technology for that region. The technology to be selected is from those which use renewable energy sources, which have capacity of production from 10m3 to 100m3 per day, which are simple and robust against existing harsh environmental conditions and have already been implemented successfully in some place. Based on these criteria, the technologies which emerged from the literature are: multistage flashing (MSF), multi effect distillation (MED), multi effect humidification (MEH), membrane distillation (MD), reverse osmosis (RO) and electro dialysis reversed (ED). Out of these technologies, RO &amp; ED are based on membrane techniques and MSF, MED &amp; MEH use thermal processes whereas MD technology uses a hybrid process of thermal and membrane techniques for desalinating the water. For evaluation of technical performance, environmental sustainability and financial feasibility of the above mentioned desalination techniques, the following criteria have been used: gained output ratio, recovery rate, pretreatment requirements, sensitivity to feed water quality, post treatment, operating temperature, operating pressure, scaling and fouling potential, corrosion susceptibility, brine disposal, prime energy requirement, mechanical and electrical power output, heat energy, running costs and water generation costs. The data regarding the performance standards of the successfully implemented desalination techniques have been obtained from the literature of performance benchmarks. The Utility Value Analysis Tool of the Rafter-Group of Multi-Criteria Analysis (MCA) has been used for measuring the performance score of a technology. To perform the utility analysis, an evaluation matrix has to be constructed through the following procedures: selection of the decision options (or assessment groups), identification of the evaluation criteria, measurement of performance and transformation of the units. Then the criteria under the objective groups are assigned a level of importance for determining their weights.To perform the sensitivity analysis the level of importance of a criterion is changed by giving more weight or rate to the assessment group of interest (or study). Within the assessment group of interests, the best performing desalination technology has been selected according to the outcome of the sensitivity analysis. The important conclusions of this study are the identification of the capabilities of thermal and membrane based small scale desalination technologies and their applicability based on site specific needs. The sensitivity analysis indicates that the MED technology is the most environmental friendly technology that uses minimum energy and produces least concentrated brine for disposal. The ED technology has emerged to be technically suitable, but it is only applicable when source water has less than 12.000 ppm salt content. The MSF process has favorable thermal efficiency and it is insensitive to feed water quality. Its major drawbacks are energy needs and post treatment requirements that affected its net score. The MD and MSF process have scored the lowest for the technical and economic assessment groups and are concluded not to be suitable for Olushandja sub-basin. The MEH process is cheaper and technically more appropriate than the MED in the two assessment groups. Based on the above mentioned evaluations, this study concluded that Olushandja sub-basin needs more data collection on the geological profile, distinctive identification of aquifers and evidence on the interaction between the aquifers. From the best available data obtained, it could not be established with certainty where the highest level of salinity can be found in the profile, or how the geological profile is layered. More data on ground water quality for spatial overview of the trends and pattern of the sub-basin will be useful in drawing better conclusion on the specific desalination technology needed which is suitable for a specified village or living space.
A sustainable development of forests and their ecosystem services requires the monitoring of the forests" state and changes as well as the prediction of their future development. To achieve the latter, eco-physiological forest growth models are usually applied. These models require calibration and validation with forestry reference data. This data includes forest structural parameters such as tree height or stem diameter which are easy to measure and can be used to estimate the core model parameters, i.e. the tree- biomass pools. The methods traditionally applied to derive the structural parameters are mainly manual and time-consuming. Hence, the in situ data acquisition is inefficient and limited in its ability to capture the vertical and horizontal variability in stand structure. Ground-based remote sensing bears the potential to overcome the limitations of the traditional methods. As they can be automated, ground-based remote sensing methods allow a much more efficient data acquisition and a larger spatial coverage. They are also able to capture forest structure in its three dimensions. Nevertheless, at present further research is required, in particular with respect to the practical integration of ground-based remote sensing data into forest growth models as well as regarding factors influencing the structural parameter retrieval from this data. Therefore, the goal of this PhD thesis was to investigate the influencing factors of two ground-based remote sensing methods (terrestrial laser scanning and hemispherical photography), which have not or only scarcely been studied to date. In addition, the use of forest structural parameters derived from these methods for the calibration of a forest growth model was assessed. Both goals were achieved. The results of this thesis could contribute significantly to a comprehensive assessment of ground-based remote sensing and its potential to derive the forest structural parameters. However, the use of these methods to calibrate forest growth models proved to be limited. An optimized data sampling design is expected to eliminate the major limitations, though. Furthermore, the combination of ground-based, airborne, and satellite remote sensing sensors was suggested to provide an optimized framework for the general integration of remotely sensed data into forest growth models. This combination of remote sensing observations at different scales will contribute greatly to a modern forest management with the purpose of warranting a sustainable forest development even under growing economic and ecological pressures.
Mankind has dramatically influenced the nitrogen (N) fluxes between soil, vegetation, water and atmosphere " the global N cycle. Increasing intensification of agricultural land use, caused by the growing demand for agricultural products, has had major impacts on ecosystems worldwide. Particularly nitrogenous gases such as ammonia (NH3) have increased mainly due to industrial livestock farming. Countries with high N deposition rates require a variety of deposition measurements and effective N monitoring networks to assess N loads. Due to high costs, current "conventional"-deposition measurement stations are not widespread and therefore provide only a patchy picture of the real extent of the prevailing N deposition status over large areas. One tool that allows quantification of the exposure and the effects of atmospheric N impacts on an ecosystem is the use of bioindicators. Due to their specific physiology and ecology, especially lichens and mosses are suitable to reflect the atmospheric N input at ecosystem level. The present doctoral project began by investigating the general ability of epiphytic lichens to qualify and quantify N deposition by analysing both lichens and total N and δ15N along a gradient of different N emission sources and severity. The results showed that this was a viable monitoring method, and a grid-based monitoring system with nitrophytic lichens was set up in the western part of Germany. Finally, a critical appraisal of three different monitoring techniques (lichens, mosses and tree bark) was carried out to compare them with national relevant N deposition assessment programmes. In total 1057 lichen samples, 348 tree bark samples, 153 moss samples and 24 deposition water samples, were analysed in this dissertation at different investigation scales in Germany.The study identified species-specific ability and tolerance of various epiphytic lichens to accumulate N. Samples of tree bark were also collected and N accumulation ability was detected in connection with the increased intensity of agriculture, and according to the presence of reduced N compounds (NHx) in the atmosphere. Nitrophytic lichens (Xanthoria parietina, Physcia spp.) have the strongest correlations with high agriculture-related N deposition. In addition, the main N sources were revealed with the help of δ15N values along a gradient of altitude and areas affected by different types of land use (NH3 density classes, livestock units and various deposition types). Furthermore, in the first nationwide survey of Germany to compare lichens, mosses and tree bark samples as biomonitors for N deposition, it was revealed that lichens are clearly the most meaningful monitor organisms in highly N affected regions. Additionally, the study shows that dealing with different biomonitors is a difficult task due to their variety of N responses. The specific receptor surfaces of the indicators and therefore their different strategies of N uptake are responsible for the tissue N concentration of each organism group. It was also shown that the δ15N values depend on their N origin and the specific N transformations in each organism system, so that a direct comparison between atmosphere and ecosystems is not possible.In conclusion, biomonitors, and especially epiphytic lichens may serve as possible alternatives to get a spatially representative picture of the N deposition conditions. Furthermore, bioindication with lichens is a cost-efficient alternative to physico-chemical measurements to comprehensively assess different prevailing N doses and sources of N pools on a regional scale. They can at least support on-site deposition instruments by qualification and quantification of N deposition.
High-resolution projections of the future climate are required to assess climate change realistically at a regional scale. This is in particular important for climate change impact studies since global projections are much too coarse to represent local conditions adequately. A major concern is thereby the change of extreme values in a warming climate due to their severe impact on the natural environment, socio-economical systems and the human health. Regional climate models (RCMs) are, however, able to reproduce much of those local features. Current horizontal resolutions are about 18-25km, which is still too coarse to directly resolve small-scale processes such as deep-convection. For this reason, projections of a possible future climate were simulated in this study with the regional climate model COSMO-CLM at horizontal resolutions of 4.5km and 1.3km for the region of Saarland-Lorraine-Luxemburg and Rhineland-Palatinate for the first time. At a horizontal scale of about 1km deep-convection is treated explicitly, which is expected to improve particularly the simulation of convective summer precipitation and a better resolved orography is expected to improve near surface fields such as 2m temperature. These simulations were performed as 10-year long time-slice experiments for the present climate (1991"2000), the near future (2041"2050) and the end of the century (2091"2100). The climate change signals of the annual and seasonal means and the change of extremes are analysed with respect to precipitation and 2m temperature and a possible added value due to the increased resolution is investigated. To assess changes in extremes, extreme indices have been applied and 10- and 20-year return levels were estimated by "peak-over-threshold" models. Since it is generally known that model output of RCMs should not directly be used for climate change impact studies, the precipitation and temperature fields were bias-corrected with several quantile-matching methods. Among them is a new developed parametric method which includes an extension for extreme values and is hence expected to improve the correction. In addition, the impact of the bias-correction on the climate change signals and on the extreme value statistics was investigated. The results reveal a significant warming of the annual mean by about +1.7 -°C until 2041"2050 and +3.7 -°C until 2091"2100, but considerably stronger signals of up to +5 -°C in summer in the Rhine Valley. Furthermore, the daily variability increases by about +0.8 -°C in summer but decreases by about -0.8 -°C in winter. Consequently, hot extremes increase moderately until the mid of the century but strongly thereafter, in particular in the Rhine Valley. Cold extremes warm continuously in the complete domain in the next 100 years but strongest in mountainous areas. The change signals with regard to annual precipitation are of the order -±10% but not significant. Significant, however, are a predicted increase of +32% of the seasonal precipitation in autumn until 2041"2050 and a decrease of -28% in summer until 2091-2100. No significant changes were found for days with intensities > 20 mm/day, but the results indicate that extremes with return periods ≤2 years increase as well as the frequency and duration of dry periods. The bias-corrections amplified positive signals but dampened negative signals and considerably reduced the power of detection. Moreover, absolute values and frequencies of extremes were altered by the correction but change signals remained approximately constant. The new method outperformed other parametric methods, in particular with regard to extreme value correction and related extreme indices and return levels. Although the bias correction removed systematic errors, it should be treated as an additional layer of uncertainty in climate change studies. Finally, the increased resolution of 1.3km improved predominantly the representation of temperature fields and extremes in terms of spatial heterogeneity. The benefits for summer precipitation were not as clear due to a severe dry-bias in summer, but it could be shown that in principle the onset and intensity of convection improves. This work demonstrates that climate change will have severe impacts in this investigation area and that in particular extremes may change considerably. An increased resolution provides thereby an added value to the results. These findings encourage further investigations, for other variables as for example near-surface wind, which will be more feasible with growing computing resources. These analyses should, however, be repeated with longer time series, different RCMs and anthropogenic scenarios to determine the robustness and uncertainty of these results more extensively.
Veterinary antibiotics are released to arable agricultural soil together with manure, including nutrients, organic matter, and microorganisms. Previously, the effects of antibiotic-contaminated manure on soil microbial community activity, function, structure, and resistance have been reported under controlled experimental conditions. This thesis further evaluated the antimicrobial effects as influenced by different manure compositions, soil microhabitats and moisture regimes, plants, and different distances to roots. Microbial community responses were determined by phenotypic phospholipid fatty acid (PLFA) and genotypic 16S rRNA gene fragment analyses. (Chapter 3) demonstrates that medication of pigs with difloxacin (DIF) and sulfadiazine (SDZ) alters the molecular-chemical pattern of slurries, confounding the detection of a consistent antibiotic effect in bulk and respective rhizosphere soil. This was evaluated in a 63-day mesocosm experiment considering typical agricultural manure applications to maize planted soil. Fecal bacteria were detected even 14 days after manure amendment. Manure of DIF- and SDZ-medicated pigs clearly affected the microbial community in mesocosm bulk and rhizosphere soil, temporarily matching antibiotic effects reported in previous studies. (Chapter 4) discusses the influences of different soil microhabitats on antibiotic fate and the effects on soil microflora. Total extractable SDZ was more than two-fold larger in earthworm burrows and soil macroaggregate surfaces compared to bulk soil or the interior fraction of aggregates. Furthermore, soil microbial communities were affected by a combination of soil microhabitat and treatment, which was reflected by different structural and functional community responses to SDZ in laboratory and under field conditions. (Chapter 5) evaluates if SDZ effects on microbial communities are more pronounced in soils which undergo periodic changes in soil moisture by drying-rewetting dynamics compared to soils without such moisture fluctuations. This was tested in a 49-day climate chamber soil pot experiment grown with grass. Manure-amended pots without or with SDZ contamination were incubated under a dynamic moisture regime with repeated drying and rewetting changes of more than twenty percent maximum water holding capacity compared to the control moisture regime. The microbial biomass, but less pronouncedly the community structure, showed an increased responsiveness to the combined stress of SDZ and dynamic moisture changes in the laboratory. Similar responses were documented under field conditions. (Chapter 6) indicated adverse effects of SDZ on root geotropism, number of lateral roots, and water uptake by plants in a 40-day greenhouse experiment with willow and maize grown in soil with environmentally relevant and worst-case antibiotic contamination. (Chapter 7) showed that the associated microbial community responded to a combination of plant species, distance to the root, and antibiotic spiking concentration. In highly antibiotic-contaminated soils, the structural and functional responses of the microbial community were dominated by indirect antibiotic effects on plants and roots.
A big challenge for agriculture in the 21st century is the provision of food safety to fast growing world- population, which not only demands the well utilisation of the available agricultural resources but also to develop new advancements in the mass production of food crops. Wheat is the third largest food crop of the world and Pakistan is the eighth largest wheat producing country globally. Rice is the second most important staple food of Pakistan after wheat, grown in all provinces of the country. Maize is the world- top ranking food crop followed by wheat and rice. The harvested produts have to be stored in different types of storage structures on small or large scale for food as well as seed purpose. In Pakistan, the harvested grains are stored for the whole year till the introduction of fresh produce in order to ensure the regular food supply throughout the year. However, it is this extended storage period making the commodity more vulnerable to insect attacks. Rhyzopertha dominica (Coleoptera: Bostrychidae), Cryptolestes ferrugineus (Coleoptera: Laemophloeidae), Tribolium castaneum (Coleoptera: Tenebrionidae) and Liposcelis spp. (Psocoptera: Liposcelididae) are the major and most damaging insect pests of stored products all around the world. Various management strategies have been adopted for stored grain insect pests mostly relying upon the use of a broad spectrum of insecticides, but the injudicious use of these chemicals raised various environmental and human health related issues, which necessitate the safe use of the prevailing control measures and evaluation of new and alternative control methods. The application of new chemical insecticides, microbial insecticides (particularly entomopathogenic fungi) and the use of inert dusts (diatomaceous earths) is believed amongst the potential alternatives to generally used insecticides in stored grain insect management system. In the current investigations, laboratory bioassays conducted to evaluate the effects of combining Imidacloprid (new chemistry insecticide) with and without Protect-It (diatomaceous earth formulation) against R. dominica, L. paeta, C. ferrugineus and T. castaneum, on three different grain commodities (i.e. wheat, maize and rice) revealed differences in adult mortality levels among grains and insect species tested. Individually, Imidacloprid was more effective as compared with Protect-It alone and the highest numbers of dead adults were recorded in wheat. The insecticidal efficacy of B. bassiana with Protect-It and DEBBM was also assessed against all test insect species under laboratory conditions. The findings of these studies revealed that the more extended exposure period and the higher combined application rate of B. bassiana and DEs provided the highest mortality of the test insect species. The progeny emergence of each insect species was also greatly suppressed where the highest dose rates of the combined treatments were applied. The residual efficacy of all three control measures Imidacloprid, B. bassiana and DEBBM formulation was also evaluated against all test insect species. The bioassays were carried out after grain treatments and monthly for 6 months. The results indicated that the adult mortality of each test insect species was decreased within the six month storage period, and the integarted application of the test grain protectants enhanced the mortality rates than their alone treatments. The maximum mortality was noted in the combined treatment of DEBBM with Imidacloprid. At the end, the effectiveness of B. bassiana, DEBBM and Imidacloprid applied alone as well as in combinations, against all above mentioned test insect species was also evaluated under field conditions in trials conducted in four districts of Punjab, Pakistan. For each district, a significant difference was observed between treatments, while the combined treatments gave better control of test species as compared with them alone. The least number of surviving adults and minimum percentage of grain damage was observed for the DEBBM and Imidacloprid combination, but DEBBM with B. bassiana provided the best long-term protection as compared with the remaining treatments.
Geographic ranges of species and their determinants are of great interest in the field of biogeography and are often studied in terms of the species" ecological niches. In this context, the range of a species is defined by the accessibility of an area, abiotic factors and biotic interactions, which affect a species" distributions with different intensities across spatial scales. Parapatry describes a distributional pattern in which the ranges of two species meet along sharp range limits with narrow contact zones. Such parapatric range limits are determined by changing abiotic conditions along sharp environmental gradients or can result from interspecific resource competition. However, it has been shown that often the interplay of abiotic conditions and species interactions determine parapatry. The geographic ranges of the land salamanders, Salamandra salamandra and S. atra, narrowly overlap in the European Alps with only few syntopic localities and to date, the cause of parapatry is unknown. The goal of this thesis was thus to identify the importance of abiotic and biotic factors for their parapatric range limits at different spatial scales. On a broad spatial scale, the role of climate for the parapatric range limits of the species was investigated within three contact zones in Switzerland. Climatic conditions at species" records were analysed and species distribution modelling techniques were used to explore the species" climatic niches and to quantify the interspecific niche overlap. Furthermore, it was tested whether the parapatric range limit coincides with a strong climatic gradient. The results revealed distinct niches for the species as well as the presence of strong climatic gradients which could explain the parapatric range limits of the species. Yet, there was a moderate interspecific niche overlap in all contact zones indicating that the species may co-occur and interact with each other in areas where they both find adequate conditions. Comparison among contact zones revealed geographic variation in the species" niches as well as in the climatic conditions at their records suggesting that the species can occur in a much wider range of conditions than they actually do. These findings imply that climate represents a main factor for the species" parapatric range limits. Yet, interspecific niche overlap and the geographic variation provide indirect evidence that interspecific interaction may also affect their spatial distribution. To test whether competition restricts the species" ranges on the habitat scale and to understand local syntopic co-occurrence of the salamanders within their contact zones, site-occupancy modelling was used. This approach allowed to find the habitat predictors that best explain the species" local distribution. While the slope of the site positively affected the occupancy probability of S. salamandra, no tested predictor explained that of S. atra. Also, there was no effect of the occurrence of one species on the occupancy probability of the other providing no evidence for competition. Should competition occur, it does not lead to spatial segregation of the species on this scale. Because biotic interactions most significantly affect the ranges of species on small spatial scales, the microhabitat conditions at locations of the species within syntopic contact zones were compared and a null model analysis was applied to determine their niche overlap. Resource selection probability function models were used to assess those attributes that affect the species" habitat selections. The results revealed species-specific microhabitat preferences related to leaf litter cover, tree number and that the species were active at different temperatures as well as times of the day. The high degree of diurnal activity of S. atra may be due to its preference of forest floor microhabitats that long remain suitable during daytime. Besides, there was a great niche overlap for shelters indicating that the species may compete for this resource. Differential habitat selection and the use of the available shelters at different times of the day may minimize species interactions and allow their local co-occurrence within contact zones. To identify whether the potential infection with the pathogenic chytrid fungus could serve as an alternative biotic explanation for the range margins of S. atra, several populations throughout its range were screened for infection. Since the occurrence of this pathogen was detected mostly at lower altitudes of the Alps, it may confine the range of S. atra to higher elevations. Because chytrid was not detected in any of the samples, the pathogen unlikely plays a role in determining its range limits. Overall, these findings underline the complexity of mechanisms that determine the range margins of parapatric species and provide an important basis for subsequent studies regarding the determinants of the parapatric distribution of the two salamander species.
Chemical communication in the reproductive behaviour of Neotropical poison frogs (Dendrobatidae)
(2013)
Chemical communication is the evolutionary oldest communication system in the animal kingdom that triggers intra- and interspecific interactions. It is initiated by the emitter releasing either a signal or a cue that causes a reaction of the receiving individual. Compared to other animals there are relatively few studies regarding chemical communication in anurans. In this thesis the impact of chemical communication on the behaviour of the poison frog Ranitomeya variabilis (Dendrobatidae) and its parental care performance was investigated. This species uses phytotelmata (small water bodies in plants) for both clutch and tadpole depositions. Since tadpoles are cannibalistic, adult frogs do not only avoid conspecifics when depositing their eggs but also transport their tadpoles individually into separated phytotelmata. The recognition of already occupied phytotelmata was shown to be due to chemical substances released by the conspecific tadpoles. In order to gain a deeper comprehension about the ability of adult R. variabilis to generally recognize and avoid tadpoles, in-situ pool choice experiments were conducted, offering chemical substances of tadpole of different species to the frogs (Chapter I). It turned out that they were able to recognize all species and avoid their chemical substances for clutch depositions. However, for tadpole depositions only dendrobatid tadpoles occurring in phytotelmata were avoided, while those species living in rivers were not. Additionally, the chemical substances of a treefrog tadpole (Hylidae) were recognized by R. variabilis. Yet, they were not avoided but preferred for tadpole depositions; thus these tadpoles might be recognized as a potential prey for the predatory poison frog larvae. One of the poison frog species which was avoided for both tadpole and clutch depositions, was the phytotelmata breeding Hyloxalus azureiventris. The chemical substances released by its tadpoles were analysed together with those of the R. variabilis tadpoles (Chapter II). After finding a suitable solid-phase extraction sorbent (DSC-18), the active chemical compounds from the water of both tadpole species were extracted and fractionated. In order to determine which fractions triggered the avoidance behaviour of the frogs, in-situ bioassays were conducted. It was found that the biologically active compounds differed between both species. Since the avoidance of the conspecific tadpoles is not advantageous to the releaser tadpoles (losing a potential food resource) the chemicals released by them might be defined as chemical cues. However, as it turned out that the avoidance of the heterospecific tadpoles was not triggered by a mere byproduct based on the close evolutionary relationship between the two species, the chemical compounds released by H. azureiventris tadpoles might be defined as chemical signals (being advantageous to the releasing tadpoles) or, more specifically as synomones, interspecificly acting chemicals that are advantageous for both emitter and receiver (since R. variabilis avoids a competition situation for its offspring, too). Another interspecific communication system investigated in this thesis was the avoidance of predator kairomones (Chapter III). Using chemical substances from damselfly larvae, it could be shown that R. variabilis was unable to recognize and avoid kairomones of these tadpole predators. However, when physically present, damselfly larvae were avoided by the frogs. For the recognition of conspecific tadpoles in contrast, chemical substances were necessary, since purely visible artificial tadpole models were not avoided. If R. variabilis is also capable to chemically communicate with adult conspecifics was investigated by presenting chemical cues/signals of same-sex or opposite-sex conspecifics to the frogs (Chapter IV). It was suggested that males would be attracted to chemical substances of females and repelled by those of conspecific males. But instead all individuals showed avoidance behaviour towards the conspecific chemicals. This was suggested to be an artefact due to confinement stress of the releaser animals, emitting disturbance cues that triggered avoidance behaviour in their conspecifics. The knowledge gained about chemical communication in parental care thus far, was used to further investigate a possible provisioning behaviour in R. variabilis. In-situ pool-choice experiments with chemical cues of conspecific tadpoles were carried out throughout the change from rainy to dry season (Chapter V). With a changepoint analysis, the exact seasonal change was defined and differences between frogs" choices were analysed. It turned out that R. variabilis does not avoid but prefer conspecific cues during the dry season for tadpole depositions, what might be interpreted as a way to provide their tadpoles with food (i.e. younger tadpoles) in order to accelerate their development when facing desiccation risk. That tadpoles were also occasionally fed with fertilized eggs could be shown in a comparative study, where phytotelmata that contained a tadpole deposited by the frogs themselves received more clutch depositions than freshly erected artificial phytotelmata containing unfamiliar tadpoles (i.e. their chemical cues; Chapter VI). Conducting home range calculations with ArcGIS, it turned out that R. variabilis males showed unexpectedly strong site fidelity, leading to the suggestion that they recognize their offspring by phytotelmata location. However, in order to test if R. variabilis is furthermore able to perform chemical offspring recognition, frogs were confronted in in-situ pool-choice experiments with chemical cues of single tadpoles that were found in their home ranges (Chapter VII). Genetic kinship analyses were conducted between those tadpoles emitting the chemical cues and those deposited together with or next to them. The results, however, indicated that frogs did not choose to deposit their offspring with or without another tadpole due to relatedness, i.e. kin recognition by chemical cues could not be confirmed in R. variabilis.